Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma14g00570 | ATGGGGATTAAATTTTCCAAGCAAGGTCAGGGGAAGGTTGAAAACCTTAGTTTGCAACACCACCTGATGAATTATCTATCCAAAAAATTTTACATCCGTAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGCTATGATCTTGACATGTCATACATTACAGATCATATTCTGGCAATGTCATTCCCTGCGGAACGGATGCGTGCTATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTATTGGACATGAGGCATCAAGGACATTACAAGGCTGGGAAAGGTCGAACCGGATTAATGGTATGTGCATACTTGGTTTACTGTGGCATGTCAGTGGAGGATGCACTTCACCTGTATGCTCAGAGGCGGACGACCAATAATGAAGGAGTATCAATTCCAAGCCAACGGCGGTATGTTGGCTACTGGGCAAAGTGCCTTTCCTTTCCAAAGGGGGTTTATAATGGATCTCCTGAGGTGAAGTTGCCCATACCCTGTAGGAGAGAGTTGCAGAGAATTCGTCTTTATGACACAGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATTGCAGGAGGTTCCTTCTCAGCTATACCGTCCATCTATGGAACGTACTCGGAGTTGTTGCAGACAATTTAAGAGTGGCTATGAGAGCAGTAACAGTCCTCGTTATTTTTTATCTTTTGTTGAAGGCGAAAATGAAGAGAACAAGTCAGAAGTAGAGCCCCATTTTATTGTTCAAATGGATACAGAGTGTTCAGCACTATACCACAAAACCTGCCTTGACTACAATTTTGAGAAGCCTTTACCTCTAACTGGAGATGTGCGCATCATATTCTACGCAAAGATGTTTGGAGGGCGTCTGTTCTATGCTTGCTTCAACTCAGCTTTCATTAAAAACAGCTTGATACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCGATTTGTGGTCCATCCTTCTGCTTGGAGTTGCCCTTCCTATCTGATAGAAAAGGATCCCATGATCCTGAACCGATCTTACCTGGGATTGCAAATCCCAATTGCGACGATATCACCGCTGCCGCCGCCGTCGCCGTGGAGTGCCTGCCAGATTTGAGAGGTCAACCTGTTCACAGGCGACAACATTTGGAGAAGCAGGATGAGCTTCTTATGGATGCTTATAGATCAATGTCACATGAACTACATAAACTTCAGGTAGAAGAAGAAATGCTCATGCGCAAGTTCTATGAAATAATGTCTGCTCATGGTCTAACAAAGAAGAGTGAAGATGGTCATGATAGTTGTAGCGGCGAAAGGAATGCGTTAGCATCTATTACTGATAGTAAATTGGACTAG | 1356 | 43.88 | MGIKFSKQGQGKVENLSLQHHLMNYLSKKFYIRNLVSKQRRRMLVAGYDLDMSYITDHILAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKAGKGRTGLMVCAYLVYCGMSVEDALHLYAQRRTTNNEGVSIPSQRRYVGYWAKCLSFPKGVYNGSPEVKLPIPCRRELQRIRLYDTVNTESIFFVVSELQEVPSQLYRPSMERTRSCCRQFKSGYESSNSPRYFLSFVEGENEENKSEVEPHFIVQMDTECSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNSAFIKNSLIQLRLQDLDKVGKKGRSICGPSFCLELPFLSDRKGSHDPEPILPGIANPNCDDITAAAAVAVECLPDLRGQPVHRRQHLEKQDELLMDAYRSMSHELHKLQVEEEMLMRKFYEIMSAHGLTKKSEDGHDSCSGERNALASITDSKLD | 451 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 2850326 | 2858107 | - | CmaCh14G005700.1 | Cma14g00570 | 307553 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma14g00570 | 451 | Gene3D | - | 216 | 336 | - | - | |
| Cma14g00570 | 451 | PANTHER | BNAC03G16750D PROTEIN | 94 | 334 | - | - | |
| Cma14g00570 | 451 | ProSiteProfiles | C2 tensin-type domain profile. | 182 | 336 | IPR014020 | - | |
| Cma14g00570 | 451 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 233 | 333 | IPR035892 | - | |
| Cma14g00570 | 451 | PANTHER | BNAC03G16750D PROTEIN | 1 | 93 | - | - | |
| Cma14g00570 | 451 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 41 | 151 | IPR029023 | - | |
| Cma14g00570 | 451 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 94 | 334 | - | - | |
| Cma14g00570 | 451 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 1 | 93 | - | - | |
| Cma14g00570 | 451 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 49 | 146 | IPR029021 | - | |
| Cma14g00570 | 451 | SMART | PTEN_C2_2 | 164 | 335 | IPR014020 | - | |
| Cma14g00570 | 451 | MobiDBLite | consensus disorder prediction | 426 | 451 | - | - | |
| Cma14g00570 | 451 | Pfam | C2 domain of PTEN tumour-suppressor protein | 259 | 333 | IPR014020 | - | |
| Cma14g00570 | 451 | Gene3D | Protein tyrosine phosphatase superfamily | 28 | 92 | IPR029021 | - | |
| Cma14g00570 | 451 | Gene3D | Protein tyrosine phosphatase superfamily | 93 | 150 | IPR029021 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma11g01149 | Cma-Chr11:6608799 | Cma14g00570 | Cma-Chr14:2850326 | 1.03E-52 | dispersed | |
| Cma11g01150 | Cma-Chr11:6614904 | Cma14g00570 | Cma-Chr14:2850326 | 5.50E-18 | dispersed | |
| Cma14g00570 | Cma-Chr14:2850326 | Cma19g00587 | Cma-Chr19:6516097 | 2.08E-06 | transposed | |
| Cma14g00570 | Cma-Chr14:2850326 | Cma11g01730 | Cma-Chr11:11504002 | 4.73E-07 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma14g00570 | K01110 | - | csv:101212127 | 456.062 |