Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00594 ATGGACTTGACTCCTGCGATTTCCACCGCCGTCGCCGCCATTACCACCGGCGGAGGACCTGTCAAATCCCCTGAATTAGACACCGACACGCCCATCAAAATCCAACCCACCACCAAATCTCACCCCTTCACCAACGGTGTCCTCAAGCGCCCCCACCACACCCCACCGCCTGTCGTCTACAAAGAATGTCTCAAGAATCACGCCGCCAGTTTAGGTGCCCATGCTTTGGACGGCTGTGGCGAGTTCATGCCCTCCTCTACCGCCACCGCCTCCGATCCCACCTCCCTTAAATGTGCTGCTTGCGGCTGCCACCGGAATTTCCACCGCCGAGAGCCGGAGGACTCAATCGCCACCCCGACGACAACCCATATCATTGAGTACCAACCTCACCATCGTCACCACCCACCGCCACCTGCAGCAAACCGAAGCCCAAGCTCTGCCTCTCCTCCACCGATCTCCTCCTCCTACTACCCTTCAGCTCCCCACATGCTTCTTGCCCTTTCCGGCGGACTGCCGGAAAACGCCAGCGGTGGATTCCACCACTCGATTCTGACTCCAAGCCCCAATTCGAGAAAGCGATTCAGAACAAAATTCACTCAAAATCAAAAGGAAAAAATGTATGAATTTGCAGAGAAAGTGGGTTGGAAGATTCAAAAACGAGACGAAGATATGATCCAAGAATTCTGCAGAAACATCGGAGTGGACAGAGGCGTTCTCAAGGTTTGGATGCACAACAACAAGAACACTTTGGGGAAAAAAGACGGCGCCCAGAACACCAACGGCAGCGGTGGCGACGGCGACGAGAAAATGAACGGCGGCAGCGAGCCACACGCCGCCGCAAATGGGTCGTCTTCTTCGTCTTGA 864 55.32 MDLTPAISTAVAAITTGGGPVKSPELDTDTPIKIQPTTKSHPFTNGVLKRPHHTPPPVVYKECLKNHAASLGAHALDGCGEFMPSSTATASDPTSLKCAACGCHRNFHRREPEDSIATPTTTHIIEYQPHHRHHPPPPAANRSPSSASPPPISSSYYPSAPHMLLALSGGLPENASGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCRNIGVDRGVLKVWMHNNKNTLGKKDGAQNTNGSGGDGDEKMNGGSEPHAAANGSSSSS 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2947003 2947866 + CmaCh14G005940.1 Cma14g00594 307577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00594 287 SUPERFAMILY Homeodomain-like 184 252 IPR009057 -
Cma14g00594 287 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 268 - -
Cma14g00594 287 MobiDBLite consensus disorder prediction 128 154 - -
Cma14g00594 287 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Cma14g00594 287 Gene3D - 183 252 - -
Cma14g00594 287 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 268 - -
Cma14g00594 287 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 191 248 IPR006455 -
Cma14g00594 287 MobiDBLite consensus disorder prediction 248 287 - -
Cma14g00594 287 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 111 IPR006456 -
Cma14g00594 287 MobiDBLite consensus disorder prediction 15 52 - -
Cma14g00594 287 MobiDBLite consensus disorder prediction 250 265 - -
Cma14g00594 287 MobiDBLite consensus disorder prediction 30 44 - -
Cma14g00594 287 Pfam ZF-HD protein dimerisation region 58 112 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00594 Cma-Chr14:2947003 Cma18g01152 Cma-Chr18:9258379 8.68E-63 dispersed
Cma18g00091 Cma-Chr18:423553 Cma14g00594 Cma-Chr14:2947003 4.36E-41 dispersed
Cma11g01027 Cma-Chr11:5597756 Cma14g00594 Cma-Chr14:2947003 8.90E-155 wgd
Cma14g00594 Cma-Chr14:2947003 Cma15g00271 Cma-Chr15:1286159 1.07E-83 wgd
Cma14g00594 Cma-Chr14:2947003 Cma04g02764 Cma-Chr4:18595504 4.94E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36222 PF04770 ZF-HD_dimer 6.10E-29 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00594 - - csv:101204974 466.848