Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00594 ATGGACTTGACTCCTGCGATTTCCACCGCCGTCGCCGCCATTACCACCGGCGGAGGACCTGTCAAATCCCCTGAATTAGACACCGACACGCCCATCAAAATCCAACCCACCACCAAATCTCACCCCTTCACCAACGGTGTCCTCAAGCGCCCCCACCACACCCCACCGCCTGTCGTCTACAAAGAATGTCTCAAGAATCACGCCGCCAGTTTAGGTGCCCATGCTTTGGACGGCTGTGGCGAGTTCATGCCCTCCTCTACCGCCACCGCCTCCGATCCCACCTCCCTTAAATGTGCTGCTTGCGGCTGCCACCGGAATTTCCACCGCCGAGAGCCGGAGGACTCAATCGCCACCCCGACGACAACCCATATCATTGAGTACCAACCTCACCATCGTCACCACCCACCGCCACCTGCAGCAAACCGAAGCCCAAGCTCTGCCTCTCCTCCACCGATCTCCTCCTCCTACTACCCTTCAGCTCCCCACATGCTTCTTGCCCTTTCCGGCGGACTGCCGGAAAACGCCAGCGGTGGATTCCACCACTCGATTCTGACTCCAAGCCCCAATTCGAGAAAGCGATTCAGAACAAAATTCACTCAAAATCAAAAGGAAAAAATGTATGAATTTGCAGAGAAAGTGGGTTGGAAGATTCAAAAACGAGACGAAGATATGATCCAAGAATTCTGCAGAAACATCGGAGTGGACAGAGGCGTTCTCAAGGTTTGGATGCACAACAACAAGAACACTTTGGGGAAAAAAGACGGCGCCCAGAACACCAACGGCAGCGGTGGCGACGGCGACGAGAAAATGAACGGCGGCAGCGAGCCACACGCCGCCGCAAATGGGTCGTCTTCTTCGTCTTGA 864 55.32 MDLTPAISTAVAAITTGGGPVKSPELDTDTPIKIQPTTKSHPFTNGVLKRPHHTPPPVVYKECLKNHAASLGAHALDGCGEFMPSSTATASDPTSLKCAACGCHRNFHRREPEDSIATPTTTHIIEYQPHHRHHPPPPAANRSPSSASPPPISSSYYPSAPHMLLALSGGLPENASGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCRNIGVDRGVLKVWMHNNKNTLGKKDGAQNTNGSGGDGDEKMNGGSEPHAAANGSSSSS 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2947003 2947866 + CmaCh14G005940.1 Cma14g00594 307577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00594 287 SUPERFAMILY Homeodomain-like 184 252 IPR009057 -
Cma14g00594 287 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 268 - -
Cma14g00594 287 MobiDBLite consensus disorder prediction 128 154 - -
Cma14g00594 287 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Cma14g00594 287 Gene3D - 183 252 - -
Cma14g00594 287 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 268 - -
Cma14g00594 287 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 191 248 IPR006455 -
Cma14g00594 287 MobiDBLite consensus disorder prediction 248 287 - -
Cma14g00594 287 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 111 IPR006456 -
Cma14g00594 287 MobiDBLite consensus disorder prediction 15 52 - -
Cma14g00594 287 MobiDBLite consensus disorder prediction 250 265 - -
Cma14g00594 287 MobiDBLite consensus disorder prediction 30 44 - -
Cma14g00594 287 Pfam ZF-HD protein dimerisation region 58 112 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00594 - - - csv:101204974 466.848
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00594 Cma-Chr14:2947003 Cma18g01152 Cma-Chr18:9258379 8.68E-63 dispersed
Cma18g00091 Cma-Chr18:423553 Cma14g00594 Cma-Chr14:2947003 4.36E-41 dispersed
Cma11g01027 Cma-Chr11:5597756 Cma14g00594 Cma-Chr14:2947003 8.90E-155 wgd
Cma14g00594 Cma-Chr14:2947003 Cma15g00271 Cma-Chr15:1286159 1.07E-83 wgd
Cma14g00594 Cma-Chr14:2947003 Cma04g02764 Cma-Chr4:18595504 4.94E-14 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g00527 . 53 236 ZF-HD Transcription Factor Family AT4G24660 55.1 2.2e-50 196.4
Cma07g00562 . 47 242 ZF-HD Transcription Factor Family AT4G24660 52.6 1.2e-48 190.7
Cma04g01895 . 83 282 ZF-HD Transcription Factor Family AT2G02540 55.3 2.7e-51 199.9
Cma06g00008 . 68 262 ZF-HD Transcription Factor Family AT2G02540 51.2 2.1e-48 190.3
Cma04g01895 . 80 285 ZF-HD Transcription Factor Family AT1G14440 55.2 4.8e-56 215.7
Cma06g00008 . 56 262 ZF-HD Transcription Factor Family AT1G14440 52.1 1.2e-51 201.1
Cma03g00745 CST 11 211 ZF-HD Transcription Factor Family AT2G18350 52.2 3.1e-48 189.5
Cma14g00594 . 11 287 ZF-HD Transcription Factor Family AT5G15210 51.7 3.1e-51 199.5
Cma15g00271 . 757 977 ZF-HD Transcription Factor Family AT5G15210 55.9 1.1e-45 181.0
Cma11g01027 . 28 267 ZF-HD Transcription Factor Family AT5G15210 53.9 6.2e-44 175.3
Cma14g00594 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.8 1.3e-56 217.6
Cma04g02764 . 16 259 ZF-HD Transcription Factor Family AT3G28920 54.5 6.2e-56 215.3
Cma11g01027 . 23 255 ZF-HD Transcription Factor Family AT3G28920 59.2 1.6e-51 200.7
Cma15g00271 . 756 979 ZF-HD Transcription Factor Family AT3G28920 57.7 1.3e-50 197.6
Cma04g02764 . 25 251 ZF-HD Transcription Factor Family AT5G39760 53.8 3.2e-50 196.4
Cma14g00594 . 30 258 ZF-HD Transcription Factor Family AT5G39760 56.6 7.1e-50 195.3
Cma15g00271 . 756 983 ZF-HD Transcription Factor Family AT5G39760 56.2 2.1e-49 193.7
Cma11g01027 . 31 264 ZF-HD Transcription Factor Family AT5G39760 64.1 1.1e-47 188.0
Cma04g02764 . 55 248 ZF-HD Transcription Factor Family AT1G69600 53.9 8.8e-50 194.5
Cma18g01152 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 6.3e-48 188.3
Cma04g01895 . 83 282 ZF-HD Transcription Factor Family AT2G02540 55.3 2.7e-51 199.9
Cma06g00008 . 68 262 ZF-HD Transcription Factor Family AT2G02540 51.2 2.1e-48 190.3
Cma05g00527 . 53 236 ZF-HD Transcription Factor Family AT4G24660 55.1 2.2e-50 196.4
Cma07g00562 . 47 242 ZF-HD Transcription Factor Family AT4G24660 52.6 1.2e-48 190.7
Cma04g02764 . 25 251 ZF-HD Transcription Factor Family AT5G39760 53.8 3.2e-50 196.4
Cma14g00594 . 30 258 ZF-HD Transcription Factor Family AT5G39760 56.6 7.1e-50 195.3
Cma15g00271 . 756 983 ZF-HD Transcription Factor Family AT5G39760 56.2 2.1e-49 193.7
Cma11g01027 . 31 264 ZF-HD Transcription Factor Family AT5G39760 64.1 1.1e-47 188.0
Cma03g00745 CST 11 211 ZF-HD Transcription Factor Family AT2G18350 52.2 3.1e-48 189.5
Cma04g02764 . 55 248 ZF-HD Transcription Factor Family AT1G69600 53.9 8.8e-50 194.5
Cma18g01152 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 6.3e-48 188.3
Cma14g00594 . 11 287 ZF-HD Transcription Factor Family AT5G15210 51.7 3.1e-51 199.5
Cma15g00271 . 757 977 ZF-HD Transcription Factor Family AT5G15210 55.9 1.1e-45 181.0
Cma11g01027 . 28 267 ZF-HD Transcription Factor Family AT5G15210 53.9 6.2e-44 175.3
Cma04g01895 . 80 285 ZF-HD Transcription Factor Family AT1G14440 55.2 4.8e-56 215.7
Cma06g00008 . 56 262 ZF-HD Transcription Factor Family AT1G14440 52.1 1.2e-51 201.1
Cma14g00594 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.8 1.3e-56 217.6
Cma04g02764 . 16 259 ZF-HD Transcription Factor Family AT3G28920 54.5 6.2e-56 215.3
Cma11g01027 . 23 255 ZF-HD Transcription Factor Family AT3G28920 59.2 1.6e-51 200.7
Cma15g00271 . 756 979 ZF-HD Transcription Factor Family AT3G28920 57.7 1.3e-50 197.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36222 PF04770 ZF-HD_dimer 6.10E-29 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g00594 Cma_Chr14 FPKM 0.944444 0.523102 26.343664 26.304508 57.437408 48.704353 59.357952 22.66296 22.621191 22.310144