Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g00594 | ATGGACTTGACTCCTGCGATTTCCACCGCCGTCGCCGCCATTACCACCGGCGGAGGACCTGTCAAATCCCCTGAATTAGACACCGACACGCCCATCAAAATCCAACCCACCACCAAATCTCACCCCTTCACCAACGGTGTCCTCAAGCGCCCCCACCACACCCCACCGCCTGTCGTCTACAAAGAATGTCTCAAGAATCACGCCGCCAGTTTAGGTGCCCATGCTTTGGACGGCTGTGGCGAGTTCATGCCCTCCTCTACCGCCACCGCCTCCGATCCCACCTCCCTTAAATGTGCTGCTTGCGGCTGCCACCGGAATTTCCACCGCCGAGAGCCGGAGGACTCAATCGCCACCCCGACGACAACCCATATCATTGAGTACCAACCTCACCATCGTCACCACCCACCGCCACCTGCAGCAAACCGAAGCCCAAGCTCTGCCTCTCCTCCACCGATCTCCTCCTCCTACTACCCTTCAGCTCCCCACATGCTTCTTGCCCTTTCCGGCGGACTGCCGGAAAACGCCAGCGGTGGATTCCACCACTCGATTCTGACTCCAAGCCCCAATTCGAGAAAGCGATTCAGAACAAAATTCACTCAAAATCAAAAGGAAAAAATGTATGAATTTGCAGAGAAAGTGGGTTGGAAGATTCAAAAACGAGACGAAGATATGATCCAAGAATTCTGCAGAAACATCGGAGTGGACAGAGGCGTTCTCAAGGTTTGGATGCACAACAACAAGAACACTTTGGGGAAAAAAGACGGCGCCCAGAACACCAACGGCAGCGGTGGCGACGGCGACGAGAAAATGAACGGCGGCAGCGAGCCACACGCCGCCGCAAATGGGTCGTCTTCTTCGTCTTGA | 864 | 55.32 | MDLTPAISTAVAAITTGGGPVKSPELDTDTPIKIQPTTKSHPFTNGVLKRPHHTPPPVVYKECLKNHAASLGAHALDGCGEFMPSSTATASDPTSLKCAACGCHRNFHRREPEDSIATPTTTHIIEYQPHHRHHPPPPAANRSPSSASPPPISSSYYPSAPHMLLALSGGLPENASGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCRNIGVDRGVLKVWMHNNKNTLGKKDGAQNTNGSGGDGDEKMNGGSEPHAAANGSSSSS | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 2947003 | 2947866 | + | CmaCh14G005940.1 | Cma14g00594 | 307577 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g00594 | 287 | SUPERFAMILY | Homeodomain-like | 184 | 252 | IPR009057 | - | |
Cma14g00594 | 287 | PANTHER | HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN | 1 | 268 | - | - | |
Cma14g00594 | 287 | MobiDBLite | consensus disorder prediction | 128 | 154 | - | - | |
Cma14g00594 | 287 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 60 | 111 | IPR006456 | - | |
Cma14g00594 | 287 | Gene3D | - | 183 | 252 | - | - | |
Cma14g00594 | 287 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 1 | 268 | - | - | |
Cma14g00594 | 287 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 191 | 248 | IPR006455 | - | |
Cma14g00594 | 287 | MobiDBLite | consensus disorder prediction | 248 | 287 | - | - | |
Cma14g00594 | 287 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 60 | 111 | IPR006456 | - | |
Cma14g00594 | 287 | MobiDBLite | consensus disorder prediction | 15 | 52 | - | - | |
Cma14g00594 | 287 | MobiDBLite | consensus disorder prediction | 250 | 265 | - | - | |
Cma14g00594 | 287 | MobiDBLite | consensus disorder prediction | 30 | 44 | - | - | |
Cma14g00594 | 287 | Pfam | ZF-HD protein dimerisation region | 58 | 112 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma14g00594 | Cma-Chr14:2947003 | Cma18g01152 | Cma-Chr18:9258379 | 8.68E-63 | dispersed | |
Cma18g00091 | Cma-Chr18:423553 | Cma14g00594 | Cma-Chr14:2947003 | 4.36E-41 | dispersed | |
Cma11g01027 | Cma-Chr11:5597756 | Cma14g00594 | Cma-Chr14:2947003 | 8.90E-155 | wgd | |
Cma14g00594 | Cma-Chr14:2947003 | Cma15g00271 | Cma-Chr15:1286159 | 1.07E-83 | wgd | |
Cma14g00594 | Cma-Chr14:2947003 | Cma04g02764 | Cma-Chr4:18595504 | 4.94E-14 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36222 | PF04770 | ZF-HD_dimer | 6.10E-29 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g00594 | - | - | csv:101204974 | 466.848 |