Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00603 ATGGAGGCGCCAGCTTTGGTACTGAAGAATGAGGAGAATCTGAGAATATGTTGGACAGGAGGTCAGGCTCAGGCCATAAGACGTGTAAAGAGACGGCGGAGAGAGCCTGCTTCCGCCGCCACCGATCAAACTAATAAACAACAGTGTGTGAAGCAACAATCCGATCAAGCTCCGACCACCACTATGAAGCGGAGTTCGAGATTTCGGGGGGTCAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTATGGGATAAACTTTCTTGGAACATGACGCAGAAGAAGAAGGGAAAACAAGTTTATCTTGGAGCTTATGATGAAGAAGAATCAGCTGCAAGGGCTTATGATTTAGCAGCACTCAAGTACTGGGGTGTAACAACCATCACTAATTTCCCTGTATCAGAGTATGAGAAAGAGATTGAGACAATGCAAACGATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTTTCAAGAGGTGTATCAAAGTATAGAGGAGTTGCAAGGCATCATCATAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGGAACAAGTACCTGTATCTTGGAACTTACGGCACTCAAGAGGAAGCTGCTCGAGCTTACGATATGGCCGCCATTGAATACCGAGGGATCAATGCGGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGCTGAAGCCTCCTCCAGTGCCACCCGCTGCCCTCAACGACGCCCATATGACGTCGAATCCAGACAAGGAACTCTCTAACTCCAGATCCATCCCAGTAGAAGAAACTTCATTGTTTGAAAACAATCACTACGACATCGATCTCTTCCATTCTCTTCAAAAGCAAGAACTTCTCGAGAGCTGCAGCACCCCGATCAATGGTTACGCTAAATCATCTTCTCCATCAGCGCTCGACCTCCTTCTTCGGTCATCATTTTTCAAGAAACTGGTTGAGACCAACTCAAATCTCTCTGTGGATGATGCTGATAATGGAGAAGAGACCAAGACTCATGGGCAGCTCAACAGTGCATTTGATGAGTTTGGAGACGTCTTCGGTGATAGACTTACAGATGAACCGTTCGTTTGCAGCTCGAACAAAGATCTGCAAGAAAGTGAGCTTCATTCATACTTTAGTGGTATGTTTCATTGTTTCAAAGCAGCCTGA 1182 46.02 MEAPALVLKNEENLRICWTGGQAQAIRRVKRRRREPASAATDQTNKQQCVKQQSDQAPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQVYLGAYDEEESAARAYDLAALKYWGVTTITNFPVSEYEKEIETMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYGTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPVPPAALNDAHMTSNPDKELSNSRSIPVEETSLFENNHYDIDLFHSLQKQELLESCSTPINGYAKSSSPSALDLLLRSSFFKKLVETNSNLSVDDADNGEETKTHGQLNSAFDEFGDVFGDRLTDEPFVCSSNKDLQESELHSYFSGMFHCFKAA 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3000914 3003458 + CmaCh14G006030.1 Cma14g00603 307586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00603 393 ProSiteProfiles AP2/ERF domain profile. 169 227 IPR001471 GO:0003700|GO:0006355
Cma14g00603 393 ProSiteProfiles AP2/ERF domain profile. 67 133 IPR001471 GO:0003700|GO:0006355
Cma14g00603 393 MobiDBLite consensus disorder prediction 27 65 - -
Cma14g00603 393 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 11 378 - -
Cma14g00603 393 SUPERFAMILY DNA-binding domain 66 135 IPR016177 GO:0003677
Cma14g00603 393 Gene3D AP2/ERF domain 168 228 IPR036955 GO:0003700|GO:0006355
Cma14g00603 393 Gene3D AP2/ERF domain 66 135 IPR036955 GO:0003700|GO:0006355
Cma14g00603 393 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Cma14g00603 393 PRINTS Ethylene responsive element binding protein signature 209 229 IPR001471 GO:0003700|GO:0006355
Cma14g00603 393 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 378 - -
Cma14g00603 393 SUPERFAMILY DNA-binding domain 168 229 IPR016177 GO:0003677
Cma14g00603 393 Pfam AP2 domain 66 125 IPR001471 GO:0003700|GO:0006355
Cma14g00603 393 Pfam AP2 domain 168 219 IPR001471 GO:0003700|GO:0006355
Cma14g00603 393 SMART rav1_2 67 139 IPR001471 GO:0003700|GO:0006355
Cma14g00603 393 SMART rav1_2 169 233 IPR001471 GO:0003700|GO:0006355
Cma14g00603 393 CDD AP2 66 135 IPR001471 GO:0003700|GO:0006355
Cma14g00603 393 CDD AP2 168 229 IPR001471 GO:0003700|GO:0006355
Cma14g00603 393 MobiDBLite consensus disorder prediction 40 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01459 Cma-Chr4:7419665 Cma14g00603 Cma-Chr14:3000914 7.67E-98 dispersed
Cma05g00927 Cma-Chr5:7492886 Cma14g00603 Cma-Chr14:3000914 2.00E-20 dispersed
Cma14g00603 Cma-Chr14:3000914 Cma17g00910 Cma-Chr17:6863250 3.02E-90 dispersed
Cma11g01039 Cma-Chr11:5690035 Cma14g00603 Cma-Chr14:3000914 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36225 PF00847 AP2 2.90E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00603 - - cpep:111791316 761.14