Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00604 ATGGGAATAACAGTAGCAGAGTTCAATGCAGTTGACATGACTTGGCTGATTTACAACTTGAATTGGAAGGGAAGAATGAGTTCTTACTTTCCCTTTAAGATCATTTCCATAGGTTGGAGTATTAAGGCTGCCTTGGTGCTGCTTTCAATGGCTCTTCTTATGCCATCTCTCAGGGCTGGCATTGCTGAATATGACGACTTTTTGCTGCAACAGGCTGAAGAGGCCAAACAAGCTGCTCTTAAAGCCTACCACCCTCACCCCATGAATGTCACCGAGCATTTTAACCATCATGTTTATTTGGCTTTAGAGGGAATTCAGGGAAACAATAACACGAGGAGGAGCTTGAGAAAATACAAGGGACCGTGCTTGGCGACGAACCCAATCGATCGTTGCTGGCGTTGCGACCAAAATTGGGCCAACAACCGTAAGAAACTTGGCTATTGTGTTCTTGGTTTTGGCCGAAAAACCACTGGGGGATTAAGAGGACGTTTCTATACTGTCACCGATGCTTCGGACGCCGATGTCGTAAACCCTAAACCCGGAACCCTCCGACATGCTGTTGTTCAAAAGCGACCGTTGTGGATTATTTTTGGACGTAGCATGATCATTAGGCTATCTAAAGAACTGTTGGTGACTAGCGATAAGACCATTGATGCTCGTGGTGCCAATGTGCATATTGCTTATGGTGCTGGTATTAGCATTCAATTCACCCGGAATGTGATCATCCATGGTCTTCACATCCACCACATTCTTTCGGCCTCTGGCGGTATGATCCGAGACGCCGACGACCATGTCGGCCTTCGAACAGTCAGTGATGGTGATGGCATATCCATCTTTGGATCATCCAATGTCTGGCTCGATCATCTCTCCATGTCCAACTGCCAGGACGGCCTCATCGACGCCATCCAAGGCTCCACGGCTATCACTGTCTCAAACTCTCATTTCACTCATCACAACGACGTGATGCTGTTTGGTGCGAGTGATTCATTTCAAGGCGACTCGATCATGCAAGTGACTGTCGCTTTCAACCATTTTGGTAAGGGATTGGTGCAGAGGATGCCGCGCTGCAGATGGGGCTTCTTCCATGTTGTCAACAACGATTACACTCACTGGCTCATGTATGCCATTGGTGGCAGCCAACATCCCACCATTATCAGTCAGGGGAATCGTTTCATTGCCCCACCTAACCCTGCTGCAAAACAGATTACGAACAGAAACTACGCAACAGAGAGTATATGGAAAACATGGACATGGAGATCGGAAGGGGATTTGTTGATGAATGGAGCGTATTTTGTTGAGTCTGGGGATCCAAGCAAGCGAAGGCCATACAGCAGGTTCGACATGATAAAGGCTAGGCCTGGCACTTTTGTTAGGAGGCTGACGCGTTTCTCTGGCTCGCTCAACTGTTATAACCCTAAACATGCCGACCACCACCTCCTCTGCTTTGGCTGCCGGCGCGATCCTCTTTCTGTTCATCATCGTTTCCGCCGCCTCGGCTCCGATCCTGTTGATTATGGACCGGCGTTGTCTGGCGATGGGGTTCTTCCTAGAGGAGAGTTTCATCCTTTGGCGACGTTGCACGTCCGGCCTAAGTCCCAGAAGGCGCTGCTTGTCGCCTACACACTTGGCTTGGAGCTCGATGTTCTTAACTCTGTGGCTGCACATGGTGGTGATAGAAATAAGCTAGACAAAGTGCTGTCTACAATGTCGCATTTCGACGTCGAGATGGCTTTGTATTATGTAAGATCTTCAGATCATGACTTTCAAGAACAAAAGAAAGCAATTCTGATGCTAATTAATGGATTGCAGAGTTAA 1815 48.04 MGITVAEFNAVDMTWLIYNLNWKGRMSSYFPFKIISIGWSIKAALVLLSMALLMPSLRAGIAEYDDFLLQQAEEAKQAALKAYHPHPMNVTEHFNHHVYLALEGIQGNNNTRRSLRKYKGPCLATNPIDRCWRCDQNWANNRKKLGYCVLGFGRKTTGGLRGRFYTVTDASDADVVNPKPGTLRHAVVQKRPLWIIFGRSMIIRLSKELLVTSDKTIDARGANVHIAYGAGISIQFTRNVIIHGLHIHHILSASGGMIRDADDHVGLRTVSDGDGISIFGSSNVWLDHLSMSNCQDGLIDAIQGSTAITVSNSHFTHHNDVMLFGASDSFQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAAKQITNRNYATESIWKTWTWRSEGDLLMNGAYFVESGDPSKRRPYSRFDMIKARPGTFVRRLTRFSGSLNCYNPKHADHHLLCFGCRRDPLSVHHRFRRLGSDPVDYGPALSGDGVLPRGEFHPLATLHVRPKSQKALLVAYTLGLELDVLNSVAAHGGDRNKLDKVLSTMSHFDVEMALYYVRSSDHDFQEQKKAILMLINGLQS 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3003631 3013046 - CmaCh14G006040.1 Cma14g00604 307587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00604 604 Pfam Pectate lyase, N terminus 61 115 IPR007524 GO:0030570
Cma14g00604 604 PANTHER PECTATE LYASE 42 472 - -
Cma14g00604 604 Gene3D - 125 468 IPR012334 -
Cma14g00604 604 SMART amb_all 200 397 IPR002022 -
Cma14g00604 604 SUPERFAMILY Pectin lyase-like 126 465 IPR011050 -
Cma14g00604 604 Pfam Pectate lyase 211 391 IPR002022 -
Cma14g00604 604 PRINTS Pollen allergen Amb family signature 208 224 IPR018082 -
Cma14g00604 604 PRINTS Pollen allergen Amb family signature 172 197 IPR018082 -
Cma14g00604 604 PRINTS Pollen allergen Amb family signature 374 393 IPR018082 -
Cma14g00604 604 PRINTS Pollen allergen Amb family signature 416 440 IPR018082 -
Cma14g00604 604 PRINTS Pollen allergen Amb family signature 446 469 IPR018082 -
Cma14g00604 604 PRINTS Pollen allergen Amb family signature 148 165 IPR018082 -
Cma14g00604 604 PRINTS Pollen allergen Amb family signature 352 371 IPR018082 -
Cma14g00604 604 PRINTS Pollen allergen Amb family signature 272 293 IPR018082 -
Cma14g00604 604 PANTHER PECTATE LYASE 18-RELATED 42 472 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00701 Cma-Chr12:3828950 Cma14g00604 Cma-Chr14:3003631 0 dispersed
Cma14g00604 Cma-Chr14:3003631 Cma08g01035 Cma-Chr8:6481057 1.94E-158 dispersed
Cma11g01037 Cma-Chr11:5687708 Cma14g00604 Cma-Chr14:3003631 1.39E-12 transposed
Cma11g01041 Cma-Chr11:5702559 Cma14g00604 Cma-Chr14:3003631 0 transposed
Cma14g00604 Cma-Chr14:3003631 Cma18g00126 Cma-Chr18:615357 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00604 K01728 - csv:101202789 771.155