Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00640 ATGGCCAAGAATCAATGTTCTTGGCTATTACACGTCCAATTGGCCTCTCCACGATTTTCGCTTGCACCAACCCAATTACATCCCCATTTCCTCCTAAATTTCTCATTTCTTTCTTCTTCTTCCGATCTCCATCAACCCTCAATCTCTGTCTGTCGCTTTCTCTCTCTCTCTAACACACATTTCTCGCCGGGGAACTCAAAAAAACCCCGGAATCCGCCATGGAAGATGAATAGAATCATACAGTCGCCGGCGTCCAAGTTCCGCCCCTTTCGGCGATACCTTGACGGCTCGTCCACCGATAAGACTACAGGCGTGGCGACCGCCACGAACGAACACCCTAATTACATCCTCCTCCGTTACCAAATCCTCGACCCTGACAGCGACATTGTCGCGCAATGGAATCGCTTGTTTCTAGTGACATGCCTGATTGCGCTTTTCATCGATCCGATGTATTTCTACACGTCGTCTGTGGGGGGACCTGCCTGCCTGACATCGGAGGTGAATCTGGGAATAGTGATCACGTTCTTCAGAACGGTGATGGATCTGTTCTTCTTGCTGCACATGGTGCTCAAGTTTCGAACCGCGTATGTGGCTCCGAGCTCTAGGGTTTTTGGAAGGGGAGAGCTGGTTATGGATGCCAGGGCCATTGCAAAGCGCTATTTGAAATCTGATTTTGTGATTGATCTCGCCGCCACTCTCCCCCTCCCACAAATAGTGATGTGGTTGGTGATTCCAGCAACAAGACATTCAAGGGTGGATCATGCCAACAACACAATCGCTCTCCTTGTTCTTCTCCAATACGTTCCAAGGCTGTTCCTCATCTTCCCTCTCAACCAACGCATCATCAAAACCACTGGCGTTGTTGCCAAAACTGCCTGGGCTGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCCAGTCATGTGTTGGGATCTACATGGTATTTGTTGTCCATAGGGAGACAGTTCGCATGCTGGAAATCAGAGTGTGCAAAGGAAAATGCGTCCAAGGTTCTAACATGTCTTCCCATCTTCTTGGATTGCAACAGTTTGAATAACACTGACAGACAATATTGGCTGAATGTCACTCATGTTACTTCCAAATGCGATCCAAGGAATGAAAACATTAGGTTCAAGTTTGGAATGTTCTCTGATGCTTTCACCAGTGATGTTGCCTCCTCCCACTTCATTGCTAAGTACTTTTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGTTCTTACGGACAAACTTTGGACACAACAACTTACCTTGGCGAGACATTATTTTGCATATCAACGTGCATAGTTGGGTTGATATTATTTTCACAACTCATTGGCAATATGCAGACATATTTGCAGTCAATGACAGTAAGACTCGAAGAATGGAGGATAAAGAGAAGGGACACTGAAGAATGGATGCGACGTCGTCAATTACCACCAGATTTGCAAGAACGAGTTCGACGATTCGTTCAATATAAATGGCAAGCCACGAGAGGAGTTAATGAAGAATCCATATTGCGTTCATTGCCCATTGACCTTCGCCGTGAGATTCAACAACATTTGTGTTTGTCGCTCGTTCGTCGTGTTCCTTTCTTCTCACAAATGGACGATCAACTTCTCGATGCCATATGCGAGCGCCTCGTCTCGTCCTTGTGTACCCAAGGAACGTATATCGTGCGAGAGGATGACCCAGTTAACGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGCTCGACAACAAATGGCGGTCGTTCTGGCTTTTTCAACTCAATCACATTAAAACCAGGTGATTTTTGTGGTGAAGAACTATTGACATGGGCTTTGATGCCAAGTTCCAGTTTGAATATGCCTTCTTCTACTCGAACTGTCCGAGCACGTACAGAAGTTGAAGCCTTCGCCCTTCGAGCTGAGGATCTCAAGTTCGTCGCCGGACAATTCAAACGCCTGCATAGCAAGAAACTACAACATGCCTTTAGATACTATTCCCATCAATGGAGGACCTGGGGTGCTTGCTTAATACAAGTAGCTTGGAGGAGGCTTAAGAAGAGAAAATTGGCAAAGAAATCAGTATTCAGAAACAGCTTAAGCTATGGAGATTCAATACAACAAGATATCGAATATGACGTCGAGCTAGCAGAAGAAAACTACGACGACGACGACGACAGTGATGAGGACATGTCTACTGCAGACTACATGAACAAAACTCAGCATCTAGGTGCTACACTTTTGGCTTCAAAGTTTGCTGCCAATACTAGAAAAGGAGTTCATCTAAAAGCCCAAAAATCCAAGGCTTCTAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA 2358 45.25 MAKNQCSWLLHVQLASPRFSLAPTQLHPHFLLNFSFLSSSSDLHQPSISVCRFLSLSNTHFSPGNSKKPRNPPWKMNRIIQSPASKFRPFRRYLDGSSTDKTTGVATATNEHPNYILLRYQILDPDSDIVAQWNRLFLVTCLIALFIDPMYFYTSSVGGPACLTSEVNLGIVITFFRTVMDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDARAIAKRYLKSDFVIDLAATLPLPQIVMWLVIPATRHSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFACWKSECAKENASKVLTCLPIFLDCNSLNNTDRQYWLNVTHVTSKCDPRNENIRFKFGMFSDAFTSDVASSHFIAKYFYCLWWGLRNLSSYGQTLDTTTYLGETLFCISTCIVGLILFSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWQATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRTVRARTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLKKRKLAKKSVFRNSLSYGDSIQQDIEYDVELAEENYDDDDDSDEDMSTADYMNKTQHLGATLLASKFAANTRKGVHLKAQKSKASSLKMPKLFKPDEPDFSMDG 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3173518 3177301 + CmaCh14G006400.1 Cma14g00640 307623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00640 785 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 112 783 - -
Cma14g00640 785 Pfam Ion transport protein 133 458 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma14g00640 785 MobiDBLite consensus disorder prediction 759 785 - -
Cma14g00640 785 CDD CAP_ED 531 662 IPR000595 -
Cma14g00640 785 Pfam Cyclic nucleotide-binding domain 554 641 IPR000595 -
Cma14g00640 785 Gene3D - 136 456 - -
Cma14g00640 785 SUPERFAMILY cAMP-binding domain-like 461 656 IPR018490 -
Cma14g00640 785 ProSiteProfiles cAMP/cGMP binding motif profile. 531 661 IPR000595 -
Cma14g00640 785 MobiDBLite consensus disorder prediction 771 785 - -
Cma14g00640 785 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 112 783 - -
Cma14g00640 785 Gene3D Helix hairpin bin 458 522 - -
Cma14g00640 785 SUPERFAMILY Voltage-gated potassium channels 124 453 - -
Cma14g00640 785 SMART cnmp_10 531 662 IPR000595 -
Cma14g00640 785 Gene3D Jelly Rolls 529 649 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00428 Cma-Chr10:1952298 Cma14g00640 Cma-Chr14:3173518 0 dispersed
Cma11g00421 Cma-Chr11:2074262 Cma14g00640 Cma-Chr14:3173518 0 dispersed
Cma14g00640 Cma-Chr14:3173518 Cma02g00901 Cma-Chr2:5361560 0 dispersed
Cma10g00132 Cma-Chr10:600493 Cma14g00640 Cma-Chr14:3173518 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00640 K05391 - csv:101216651 1349.73