Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00644 ATGGAGTCTGGGCGGTTCTTGTTTAATCCGCGGCCTTGCGGTGGCAACATGCTTTACCTTGGCGGAGCCGGTGGCGATCCTGTTCTGCGAGGAGGAAGAACAATGATTAGTATGACTATGCATGAGAGTCCAAAGGGGAGGCCATTTTTTCAATCACCGGACGATCTTTACGATGATGAATATTACGACGAGTTCTACCCTGAAAAGAAGCGTCGTCTCACCCATGATCAGGTTCAAATGCTGGAGAAGAGCTTTGATGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTGGCCAAGAAGTTGGGGCTGCAACCAAGGCAGGTGGCTGTGTGGTTCCAGAATCGTCGTGCTCGATGGAAGACAAAGCAGCTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATTTGCTTCTGTCTAACTATGACTCAGTTATCAAAGAGAATGCAGATCTTAAATCTCAAGTGGCTTCCTTAACTGAGAAATGTCTGGCTAAAGAGCTGGATGGAGGAGAAGCACCAATTCCATGTGTGACATCAGAGCCTCTTCTAGCAGACATTGGCAATGTCTCCACCCCACACTCCAGCAGAAAGGCTGAAGATCGTCTCAGTTCAGGGAGTGATGGCAGTACGGTGATCGACGATAATTGTCGACAACTCATTGATTGCTGTGATTCTTACTTCCCCAGCAACGAGTATCTGCAATGTGCACCTCTGCCTAATGGGTTGCAAATGGAACATGATAATAGCAATAACAATAGCAACTACTTGTTCTCAGACATGTTTGCAGTAACAGGCCAACAAAATCAGGAGGGACTGGGAGGGCCTCCTGCTTGGTGGACATGGCCTTAG 858 47.55 MESGRFLFNPRPCGGNMLYLGGAGGDPVLRGGRTMISMTMHESPKGRPFFQSPDDLYDDEYYDEFYPEKKRRLTHDQVQMLEKSFDEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLLSNYDSVIKENADLKSQVASLTEKCLAKELDGGEAPIPCVTSEPLLADIGNVSTPHSSRKAEDRLSSGSDGSTVIDDNCRQLIDCCDSYFPSNEYLQCAPLPNGLQMEHDNSNNNSNYLFSDMFAVTGQQNQEGLGGPPAWWTWP 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3207688 3210135 - CmaCh14G006440.1 Cma14g00644 307627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00644 285 Pfam Homeobox associated leucine zipper 124 164 IPR003106 GO:0006355|GO:0043565
Cma14g00644 285 SUPERFAMILY Homeodomain-like 64 126 IPR009057 -
Cma14g00644 285 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Cma14g00644 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 249 IPR045224 GO:0003700
Cma14g00644 285 SMART HOX_1 67 128 IPR001356 GO:0003677
Cma14g00644 285 Gene3D - 64 130 - -
Cma14g00644 285 Coils Coil 144 164 - -
Cma14g00644 285 Pfam Homeodomain 69 122 IPR001356 GO:0003677
Cma14g00644 285 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677
Cma14g00644 285 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677
Cma14g00644 285 MobiDBLite consensus disorder prediction 190 210 - -
Cma14g00644 285 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Cma14g00644 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 249 - -
Cma14g00644 285 CDD homeodomain 69 125 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma14g00644 Cma15g00329 CCT
Cma04g02715 Cma14g00644 CCT
Cma11g01423 Cma14g00644 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00928 Cma-Chr13:7361934 Cma14g00644 Cma-Chr14:3207688 1.19E-40 dispersed
Cma14g00644 Cma-Chr14:3207688 Cma18g00128 Cma-Chr18:627359 5.90E-42 dispersed
Cma11g01423 Cma-Chr11:9382874 Cma14g00644 Cma-Chr14:3207688 9.93E-158 wgd
Cma14g00644 Cma-Chr14:3207688 Cma15g00329 Cma-Chr15:1521359 7.48E-80 wgd
Cma14g00644 Cma-Chr14:3207688 Cma04g02715 Cma-Chr4:18325430 4.13E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36229 PF00046 Homeodomain 2.40E-18 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00644 K09338 - csv:101212142 465.307