Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00725 ATGGATTGGGGTTGGGGAACTCTTTCTGGAAAACCCACTTTCCGGGAAAAGAATCACACCCCCCCACCGCCCACAAGTTTCTCTGACTCGATTGGTTCTTCCAATAATAATGAAGAACCCATTCTCGAGGGTTCGAGCCAGGAAAGTTCTTCCTCTAATGGATCCTCCAAAAGGACTCGAACCCTCCAAGGGACTCAAAATCAGTCGTGTTTGGTTGATGGTTGTGACTCTGACCTGAAGAATTGCAAGGAGTATCATCGACGCCATAGGGTCTGCGATTTGCACTCCAAAACCCCTGTTGTGATGGTGAGGGGCGAGGAAAAACGATTCTGTCAACAGTGCAGCAGGTTCCATCCGCTTGGTGAGTTCGATGAGGTGAAGCGAAGCTGCAGAAAGCGGCTTGATGGGCACAATCGCCGCAGGAGGAAGCCTCAACCTGAATCCCTGTTTATGAGTTCAAGAGATTTCCTGTCAAACTGCAAAGGGCCAATTGTGCTGCAGTTCAGTAATCAACAGATTCATGTGCCTGATGAACATGGTAGGAATTTATGGTCCATGAGGCCTGAAGAAACCTCCATGGTTCCACCAAATTCCTCTGCTTACTTCAGCTATGGAGGAGAAGGAGACAACGAAGAGTTGCCCTTTTTCCTCCACAAAAATGGGACAAGGCAAGGTAAGCAAATGGTGTCTTCTCGGTTATGTTTCAATCAGCAACTTCCTGATGCAATCTCTCAGGGAAGTGAGGTGGGCAGCCAGAAACAAGCGGTGCCTACCAATACTTCGCCCGTGGATTCAGGTTGTGCTCTCTATCTTCTGTCATCGCACCCAGATGCTGGGTTGAGCTCTTTAATTCAGTCTCATCTGAGTCTTCCAGTCCAAACTCCAGAGACTGAGCTGCATTTCAGTAGTTTAAGTGACTTCTCTGCCTCCTTTGGCTCCAAGGACAAGCCTGTTTGTGAAACCAATCTTGATAATGGGTTGGTGCTTGAAATGGAGGCATCTGATGGCTTGTTCCAAAGTGAGGCTCCACATAAGTTTCCCGTTTCTTGGGAGTAG 1056 48.2 MDWGWGTLSGKPTFREKNHTPPPPTSFSDSIGSSNNNEEPILEGSSQESSSSNGSSKRTRTLQGTQNQSCLVDGCDSDLKNCKEYHRRHRVCDLHSKTPVVMVRGEEKRFCQQCSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCKGPIVLQFSNQQIHVPDEHGRNLWSMRPEETSMVPPNSSAYFSYGGEGDNEELPFFLHKNGTRQGKQMVSSRLCFNQQLPDAISQGSEVGSQKQAVPTNTSPVDSGCALYLLSSHPDAGLSSLIQSHLSLPVQTPETELHFSSLSDFSASFGSKDKPVCETNLDNGLVLEMEASDGLFQSEAPHKFPVSWE 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3636994 3639243 - CmaCh14G007250.1 Cma14g00725 307708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00725 351 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 46 351 IPR044817 GO:0003677
Cma14g00725 351 SUPERFAMILY SBT domain 69 149 IPR036893 GO:0003677|GO:0005634
Cma14g00725 351 MobiDBLite consensus disorder prediction 1 63 - -
Cma14g00725 351 MobiDBLite consensus disorder prediction 20 63 - -
Cma14g00725 351 Pfam SBP domain 70 143 IPR004333 GO:0003677
Cma14g00725 351 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Cma14g00725 351 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 46 351 - -
Cma14g00725 351 Gene3D - 61 131 IPR036893 GO:0003677|GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01513 Cma14g00725 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00815 Cma-Chr13:6870551 Cma14g00725 Cma-Chr14:3636994 4.17E-42 dispersed
Cma14g00725 Cma-Chr14:3636994 Cma18g00310 Cma-Chr18:1655316 4.52E-43 dispersed
Cma10g00052 Cma-Chr10:189233 Cma14g00725 Cma-Chr14:3636994 1.09E-41 wgd
Cma11g01513 Cma-Chr11:9895580 Cma14g00725 Cma-Chr14:3636994 6.68E-170 wgd
Cma11g00026 Cma-Chr11:119686 Cma14g00725 Cma-Chr14:3636994 4.51E-31 wgd
Cma14g00725 Cma-Chr14:3636994 Cma17g01437 Cma-Chr17:9453188 1.56E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36234 PF03110 SBP 1.10E-30 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00725 - - cmos:111442201 698.738