Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00727 ATGGAGAATTATCAGATGTTCTTCCCTTGCTCCAACGGCGGCGGACTGTCGGCTTATAGTCAACCCGACATCTCATCCGGCACCGCCTCTGACATGTTCCGGAATTTTCACGGCGGCGATCCGCAAGCAAGTGGCGTTTTGGGGCTTAAGACAGAGGTGGTTACGGCGGCGGTGGAAGCCGACAGGAACTGTGGCGGCAGCGCAAATAAGAAAGGGGAGAAGAAGGTGAGGAAACCCAGATATGCTTTTCAGACGAGGAGTCAAGTTGACATTCTTGACGATGGATATCGTTGGAGAAAGTATGGTCAAAAAGCAGTCAAAAACAACAAGTTTCCTAGGAGCTATTATCGGTGCACGCATCAAGGGTGCAATGTGAAGAAGCAAGTGCAAAGACTAACCAAAGATGAAGGGGTGGTGGTAACGACGTATGAAGGCATGCATACACACTCCATTGATAAACCAACAGACAACTTTGAACAAATCTTGAGTAGAATGCAGATTTATAGTACTCCTTTTTGA 519 47.59 MENYQMFFPCSNGGGLSAYSQPDISSGTASDMFRNFHGGDPQASGVLGLKTEVVTAAVEADRNCGGSANKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3641445 3643996 - CmaCh14G007270.1 Cma14g00727 307710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00727 172 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 167 IPR044810 GO:0003700
Cma14g00727 172 SUPERFAMILY WRKY DNA-binding domain 84 151 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma14g00727 172 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 1 167 - -
Cma14g00727 172 Pfam WRKY DNA -binding domain 93 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g00727 172 SMART WRKY_cls 92 151 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g00727 172 ProSiteProfiles WRKY domain profile. 87 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g00727 172 Gene3D WRKY domain 69 152 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01514 Cma14g00727 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00727 Cma-Chr14:3641445 Cma17g00379 Cma-Chr17:2109793 1.77E-37 dispersed
Cma14g01457 Cma-Chr14:11100832 Cma14g00727 Cma-Chr14:3641445 3.63E-34 dispersed
Cma04g00723 Cma-Chr4:3680441 Cma14g00727 Cma-Chr14:3641445 1.80E-38 transposed
Cma06g01672 Cma-Chr6:10315006 Cma14g00727 Cma-Chr14:3641445 2.48E-58 transposed
Cma11g01514 Cma-Chr11:9902931 Cma14g00727 Cma-Chr14:3641445 3.98E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36235 PF03106 WRKY 2.90E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00727 - - cmax:111486729 283.493