Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00730 ATGGATCCTAAGACCTCATCAGTAACAAAGCAACCCCAAGAAGTGGAAACCAAGTTTTTGAAGCTCCCACAAGAACAGCAACAAGAACAACGACAAGAACAAGAACAAGAACAACAATCAATCATGGGTGAAAACAAACCAGCTGAAATCAAGGATTTCCAAATAGCAGTGGCAGAGAAAGAAGAAGGCAAAAAACAGTTAGCACCGAAAAGAAGCTCCAACAAAGACCGTCATACCAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCGGCCAGGATTTTTCAATTAACCAGAGAATTGGGTCATAAATCTGACGGCGAGACCATTCAGTGGCTGCTACAGCAGGCGGAGCCATCGATAATCGCCGTTACTGGCACTGGAACAATCCCAGCTTCTGCTCTTGCAGCGGCGGCGGGTTCCGTTTCGCAACAGGGGGCTTCTCTTTCGGCCGGATTGCACCAAAAATTGGAGGAATTTGGTGGTGGGGGGTCCAGTAGGGCCAATTGGGGCAATTTGGGGCGACCCCATTTGGCCGCCACAGCAACAACAGGGCTTTGGCCTTCATCTGTCAGTGGCTTTGGGTATCAGTCTTCAACAGCAGCAGCTGCTGCTGCTGCTGCTCAATCAGCCACTAATTTAGCTAATGAAACTTCAAATTACTTTCACAAACTTGGGTTCCCTCCCTTTGACTTAACCTCCACCAACATGGGTCCTATGAGTTTCACCTCCATTTTAGGTGGAAACGCCCAACAATTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGGCCATATTGGGGTCATAAATCCTCAAACACTGAACCAGATTTACCAACAGATGGGTCAAGCTAGAGTTCATCAGCATCATCATCAACACCAGCAGCAGCAACAACAACAACAACCTCCTGCCAAGGATGATTCTCAAGATTCAGGCTAG 951 48.05 MDPKTSSVTKQPQEVETKFLKLPQEQQQEQRQEQEQEQQSIMGENKPAEIKDFQIAVAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAVTGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEEFGGGGSSRANWGNLGRPHLAATATTGLWPSSVSGFGYQSSTAAAAAAAAQSATNLANETSNYFHKLGFPPFDLTSTNMGPMSFTSILGGNAQQLPGLELGLSQDGHIGVINPQTLNQIYQQMGQARVHQHHHQHQQQQQQQQPPAKDDSQDSG 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3670998 3671948 + CmaCh14G007300.1 Cma14g00730 307713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00730 316 Pfam TCP family transcription factor 73 202 IPR017887 -
Cma14g00730 316 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Cma14g00730 316 MobiDBLite consensus disorder prediction 285 316 - -
Cma14g00730 316 MobiDBLite consensus disorder prediction 1 84 - -
Cma14g00730 316 MobiDBLite consensus disorder prediction 1 43 - -
Cma14g00730 316 MobiDBLite consensus disorder prediction 297 316 - -
Cma14g00730 316 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 44 315 IPR005333 GO:0003700
Cma14g00730 316 Coils Coil 24 44 - -
Cma14g00730 316 MobiDBLite consensus disorder prediction 53 84 - -
Cma14g00730 316 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 44 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00005 Cma-Chr8:34378 Cma14g00730 Cma-Chr14:3670998 2.92E-73 dispersed
Cma14g00730 Cma-Chr14:3670998 Cma17g00004 Cma-Chr17:24517 1.18E-37 dispersed
Cma11g01520 Cma-Chr11:9944628 Cma14g00730 Cma-Chr14:3670998 2.73E-148 wgd
Cma14g00730 Cma-Chr14:3670998 Cma17g01429 Cma-Chr17:9416103 3.71E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36236 PF03634 TCP 1.10E-30 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00730 - - cpep:111791513 535.028