Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g00730 | ATGGATCCTAAGACCTCATCAGTAACAAAGCAACCCCAAGAAGTGGAAACCAAGTTTTTGAAGCTCCCACAAGAACAGCAACAAGAACAACGACAAGAACAAGAACAAGAACAACAATCAATCATGGGTGAAAACAAACCAGCTGAAATCAAGGATTTCCAAATAGCAGTGGCAGAGAAAGAAGAAGGCAAAAAACAGTTAGCACCGAAAAGAAGCTCCAACAAAGACCGTCATACCAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCGGCCAGGATTTTTCAATTAACCAGAGAATTGGGTCATAAATCTGACGGCGAGACCATTCAGTGGCTGCTACAGCAGGCGGAGCCATCGATAATCGCCGTTACTGGCACTGGAACAATCCCAGCTTCTGCTCTTGCAGCGGCGGCGGGTTCCGTTTCGCAACAGGGGGCTTCTCTTTCGGCCGGATTGCACCAAAAATTGGAGGAATTTGGTGGTGGGGGGTCCAGTAGGGCCAATTGGGGCAATTTGGGGCGACCCCATTTGGCCGCCACAGCAACAACAGGGCTTTGGCCTTCATCTGTCAGTGGCTTTGGGTATCAGTCTTCAACAGCAGCAGCTGCTGCTGCTGCTGCTCAATCAGCCACTAATTTAGCTAATGAAACTTCAAATTACTTTCACAAACTTGGGTTCCCTCCCTTTGACTTAACCTCCACCAACATGGGTCCTATGAGTTTCACCTCCATTTTAGGTGGAAACGCCCAACAATTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGGCCATATTGGGGTCATAAATCCTCAAACACTGAACCAGATTTACCAACAGATGGGTCAAGCTAGAGTTCATCAGCATCATCATCAACACCAGCAGCAGCAACAACAACAACAACCTCCTGCCAAGGATGATTCTCAAGATTCAGGCTAG | 951 | 48.05 | MDPKTSSVTKQPQEVETKFLKLPQEQQQEQRQEQEQEQQSIMGENKPAEIKDFQIAVAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAVTGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEEFGGGGSSRANWGNLGRPHLAATATTGLWPSSVSGFGYQSSTAAAAAAAAQSATNLANETSNYFHKLGFPPFDLTSTNMGPMSFTSILGGNAQQLPGLELGLSQDGHIGVINPQTLNQIYQQMGQARVHQHHHQHQQQQQQQQPPAKDDSQDSG | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 3670998 | 3671948 | + | CmaCh14G007300.1 | Cma14g00730 | 307713 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g00730 | 316 | Pfam | TCP family transcription factor | 73 | 202 | IPR017887 | - | |
Cma14g00730 | 316 | ProSiteProfiles | TCP domain profile. | 74 | 128 | IPR017887 | - | |
Cma14g00730 | 316 | MobiDBLite | consensus disorder prediction | 285 | 316 | - | - | |
Cma14g00730 | 316 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
Cma14g00730 | 316 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Cma14g00730 | 316 | MobiDBLite | consensus disorder prediction | 297 | 316 | - | - | |
Cma14g00730 | 316 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 44 | 315 | IPR005333 | GO:0003700 | |
Cma14g00730 | 316 | Coils | Coil | 24 | 44 | - | - | |
Cma14g00730 | 316 | MobiDBLite | consensus disorder prediction | 53 | 84 | - | - | |
Cma14g00730 | 316 | PANTHER | TRANSCRIPTION FACTOR TCP20-LIKE | 44 | 315 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00005 | Cma-Chr8:34378 | Cma14g00730 | Cma-Chr14:3670998 | 2.92E-73 | dispersed | |
Cma14g00730 | Cma-Chr14:3670998 | Cma17g00004 | Cma-Chr17:24517 | 1.18E-37 | dispersed | |
Cma11g01520 | Cma-Chr11:9944628 | Cma14g00730 | Cma-Chr14:3670998 | 2.73E-148 | wgd | |
Cma14g00730 | Cma-Chr14:3670998 | Cma17g01429 | Cma-Chr17:9416103 | 3.71E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36236 | PF03634 | TCP | 1.10E-30 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g00730 | - | - | cpep:111791513 | 535.028 |