Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g00762 | ATGCTACCGAAATCCACCGGAATCCTTTGGCTTGACGGCGACCATCACGACGGCGCTTCTTGGAACAGAACCAACAACCACAACAACGATGACATCGCCGTTGCTGGCTCCGCTTCCTCCTTCAAATCCATGCTCCAATCCGACTGGTACATGAACTCTACTACTCCTCTGAATCCTTCTAACCAAGATTTTCATTCCCTCTCTTCACACCCCGATGTTCGAAACCTTCCTTTCAACTCCAATCCGCCGGATAACTTGCTCTTACGCCCCATAGATTCTTCCTCTGCCTGCTCTGCATCACAGGCTTTTTCTCTTGATCCTTCCCATTCCCAATCCATGTTGCCTCCGCAGAAATCCTGTTTCCCTTCTCTTTTTAACGTTGCTTGTAGCAGTAATTTTGAGAACGGCTTCGATTTGGGCGGTGAGAATGGCCTGCTTGGTTCTTACCAGGGGAACCAAGTTTCGAATTCCTCAGCCATGATGGGATTCAACGGCATTTCGTCTCTTCCTCAAATCGGTAATCAGGAACTAAGCTTAAACAACGCGGAGTTTCCGGTCGCTGATAACCCTCCGGCATTCGGCGCTGGATTTAATCCGACGGATGCCTTCGAGAGCTTCGATGGTTGCGGGAATGCTCTGTTTCAGAATAGGTCAAAGGCTTTGAGACCTCCTGAATCGTTCCCTCAGGTCGGCGGCACACAGCCGACGCTGTTCCAGAAGCGGGCGGCGCATCGAGTTGGCTCTTCCGGAGCTGATAAACTAGAGAATTTGGAGGTTTCGGGTTCAAAATTTGGAGACGGCTCAATGTGGATGCCGAATATGGAGAGGCTGATGAAGAACAGCGACGAGGACATTGAGGACGACAGCCTGGATATTTCTCACTTGAATTACGATTCCGATGAAGCCAATGAGTATAATAAGCTAGAGGACAATGTTAATGCTAAAAACTCCGGAAGCAATTCCAATGCCAACACCACTGTAGCTGGCGGAAACCAGAAGGGGAAGAGGAAGGGGATGCCGGCGAAAAATCTCATGGCGGAGCGACGGCGGAGAAAGAAGCTGAATGATAGACTCTACATGCTTAGGTCCGTCGTACCCAAAATCAGCAAGATGGATAGAGCTTCAATCCTTGGAGATGCCATTGATTACCTGAAGGAGCTTCTTCAAAAGATAAATGAACTCCATAATGAACTCGAGTCGACTCCTCCTCCTCCTCCTGGTTCTTCGTTGCAGCCTCCTGCAAGCTTTCACCCTTCGACGCCGACGCTGCCGAATCTTCCCTGTCGTGTCAAAGATGAGCTGTGTCCAAGCTCCATGTCAAGCCCCAAAGCTCAGCCTGCCAGGGTCGAAGTCCGAGCCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCAGGTCTCTTGCTATCCACCATGAAGGCTCTGGACAACCTTGGCTTGGACGTCCAACAAGCTGTGGTCAGCTGTTTCAATGGATTTGCTTTAGACGTGTTTCGCGCCGAGCAATCCAAGGAAGGCGAGGAGATCTCACCCGAGCAAATTAAAGCAGTGCTGTTGGATTCAGCTGGTTTACATGGTGTTGTTTAA | 1599 | 49.91 | MLPKSTGILWLDGDHHDGASWNRTNNHNNDDIAVAGSASSFKSMLQSDWYMNSTTPLNPSNQDFHSLSSHPDVRNLPFNSNPPDNLLLRPIDSSSACSASQAFSLDPSHSQSMLPPQKSCFPSLFNVACSSNFENGFDLGGENGLLGSYQGNQVSNSSAMMGFNGISSLPQIGNQELSLNNAEFPVADNPPAFGAGFNPTDAFESFDGCGNALFQNRSKALRPPESFPQVGGTQPTLFQKRAAHRVGSSGADKLENLEVSGSKFGDGSMWMPNMERLMKNSDEDIEDDSLDISHLNYDSDEANEYNKLEDNVNAKNSGSNSNANTTVAGGNQKGKRKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQKINELHNELESTPPPPPGSSLQPPASFHPSTPTLPNLPCRVKDELCPSSMSSPKAQPARVEVRAREGRAVNIHMFCSRKPGLLLSTMKALDNLGLDVQQAVVSCFNGFALDVFRAEQSKEGEEISPEQIKAVLLDSAGLHGVV | 532 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 3798446 | 3801654 | + | CmaCh14G007620.1 | Cma14g00762 | 307745 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g00762 | 532 | Pfam | Helix-loop-helix DNA-binding domain | 345 | 387 | IPR011598 | GO:0046983 | |
Cma14g00762 | 532 | Gene3D | - | 331 | 401 | IPR036638 | GO:0046983 | |
Cma14g00762 | 532 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 341 | 407 | IPR036638 | GO:0046983 | |
Cma14g00762 | 532 | Coils | Coil | 377 | 401 | - | - | |
Cma14g00762 | 532 | MobiDBLite | consensus disorder prediction | 397 | 423 | - | - | |
Cma14g00762 | 532 | PANTHER | BHLH TRANSCRIPTIONAL FACTOR | 95 | 531 | - | - | |
Cma14g00762 | 532 | MobiDBLite | consensus disorder prediction | 311 | 340 | - | - | |
Cma14g00762 | 532 | SMART | finulus | 344 | 393 | IPR011598 | GO:0046983 | |
Cma14g00762 | 532 | CDD | ACT_UUR-ACR-like | 461 | 521 | - | - | |
Cma14g00762 | 532 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 338 | 387 | IPR011598 | GO:0046983 | |
Cma14g00762 | 532 | MobiDBLite | consensus disorder prediction | 311 | 331 | - | - | |
Cma14g00762 | 532 | CDD | bHLH_AtAMS_like | 341 | 399 | - | - | |
Cma14g00762 | 532 | MobiDBLite | consensus disorder prediction | 399 | 420 | - | - | |
Cma14g00762 | 532 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 95 | 531 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01550 | Cma14g00762 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00858 | Cma-Chr3:6395689 | Cma14g00762 | Cma-Chr14:3798446 | 1.55E-41 | dispersed | |
Cma11g01372 | Cma-Chr11:9069112 | Cma14g00762 | Cma-Chr14:3798446 | 1.93E-26 | dispersed | |
Cma12g00174 | Cma-Chr12:791251 | Cma14g00762 | Cma-Chr14:3798446 | 3.29E-44 | dispersed | |
Cma13g00829 | Cma-Chr13:6934779 | Cma14g00762 | Cma-Chr14:3798446 | 3.01E-129 | dispersed | |
Cma14g00762 | Cma-Chr14:3798446 | Cma18g00292 | Cma-Chr18:1555718 | 1.65E-148 | dispersed | |
Cma19g00746 | Cma-Chr19:7435816 | Cma14g00762 | Cma-Chr14:3798446 | 1.97E-26 | dispersed | |
Cma17g00073 | Cma-Chr17:358156 | Cma14g00762 | Cma-Chr14:3798446 | 8.22E-13 | transposed | |
Cma11g01550 | Cma-Chr11:10084392 | Cma14g00762 | Cma-Chr14:3798446 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36239 | PF00010 | HLH | 2.20E-09 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g00762 | - | - | bhj:120082707 | 810.446 |