Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00762 ATGCTACCGAAATCCACCGGAATCCTTTGGCTTGACGGCGACCATCACGACGGCGCTTCTTGGAACAGAACCAACAACCACAACAACGATGACATCGCCGTTGCTGGCTCCGCTTCCTCCTTCAAATCCATGCTCCAATCCGACTGGTACATGAACTCTACTACTCCTCTGAATCCTTCTAACCAAGATTTTCATTCCCTCTCTTCACACCCCGATGTTCGAAACCTTCCTTTCAACTCCAATCCGCCGGATAACTTGCTCTTACGCCCCATAGATTCTTCCTCTGCCTGCTCTGCATCACAGGCTTTTTCTCTTGATCCTTCCCATTCCCAATCCATGTTGCCTCCGCAGAAATCCTGTTTCCCTTCTCTTTTTAACGTTGCTTGTAGCAGTAATTTTGAGAACGGCTTCGATTTGGGCGGTGAGAATGGCCTGCTTGGTTCTTACCAGGGGAACCAAGTTTCGAATTCCTCAGCCATGATGGGATTCAACGGCATTTCGTCTCTTCCTCAAATCGGTAATCAGGAACTAAGCTTAAACAACGCGGAGTTTCCGGTCGCTGATAACCCTCCGGCATTCGGCGCTGGATTTAATCCGACGGATGCCTTCGAGAGCTTCGATGGTTGCGGGAATGCTCTGTTTCAGAATAGGTCAAAGGCTTTGAGACCTCCTGAATCGTTCCCTCAGGTCGGCGGCACACAGCCGACGCTGTTCCAGAAGCGGGCGGCGCATCGAGTTGGCTCTTCCGGAGCTGATAAACTAGAGAATTTGGAGGTTTCGGGTTCAAAATTTGGAGACGGCTCAATGTGGATGCCGAATATGGAGAGGCTGATGAAGAACAGCGACGAGGACATTGAGGACGACAGCCTGGATATTTCTCACTTGAATTACGATTCCGATGAAGCCAATGAGTATAATAAGCTAGAGGACAATGTTAATGCTAAAAACTCCGGAAGCAATTCCAATGCCAACACCACTGTAGCTGGCGGAAACCAGAAGGGGAAGAGGAAGGGGATGCCGGCGAAAAATCTCATGGCGGAGCGACGGCGGAGAAAGAAGCTGAATGATAGACTCTACATGCTTAGGTCCGTCGTACCCAAAATCAGCAAGATGGATAGAGCTTCAATCCTTGGAGATGCCATTGATTACCTGAAGGAGCTTCTTCAAAAGATAAATGAACTCCATAATGAACTCGAGTCGACTCCTCCTCCTCCTCCTGGTTCTTCGTTGCAGCCTCCTGCAAGCTTTCACCCTTCGACGCCGACGCTGCCGAATCTTCCCTGTCGTGTCAAAGATGAGCTGTGTCCAAGCTCCATGTCAAGCCCCAAAGCTCAGCCTGCCAGGGTCGAAGTCCGAGCCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCAGGTCTCTTGCTATCCACCATGAAGGCTCTGGACAACCTTGGCTTGGACGTCCAACAAGCTGTGGTCAGCTGTTTCAATGGATTTGCTTTAGACGTGTTTCGCGCCGAGCAATCCAAGGAAGGCGAGGAGATCTCACCCGAGCAAATTAAAGCAGTGCTGTTGGATTCAGCTGGTTTACATGGTGTTGTTTAA 1599 49.91 MLPKSTGILWLDGDHHDGASWNRTNNHNNDDIAVAGSASSFKSMLQSDWYMNSTTPLNPSNQDFHSLSSHPDVRNLPFNSNPPDNLLLRPIDSSSACSASQAFSLDPSHSQSMLPPQKSCFPSLFNVACSSNFENGFDLGGENGLLGSYQGNQVSNSSAMMGFNGISSLPQIGNQELSLNNAEFPVADNPPAFGAGFNPTDAFESFDGCGNALFQNRSKALRPPESFPQVGGTQPTLFQKRAAHRVGSSGADKLENLEVSGSKFGDGSMWMPNMERLMKNSDEDIEDDSLDISHLNYDSDEANEYNKLEDNVNAKNSGSNSNANTTVAGGNQKGKRKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQKINELHNELESTPPPPPGSSLQPPASFHPSTPTLPNLPCRVKDELCPSSMSSPKAQPARVEVRAREGRAVNIHMFCSRKPGLLLSTMKALDNLGLDVQQAVVSCFNGFALDVFRAEQSKEGEEISPEQIKAVLLDSAGLHGVV 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3798446 3801654 + CmaCh14G007620.1 Cma14g00762 307745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00762 532 Pfam Helix-loop-helix DNA-binding domain 345 387 IPR011598 GO:0046983
Cma14g00762 532 Gene3D - 331 401 IPR036638 GO:0046983
Cma14g00762 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 407 IPR036638 GO:0046983
Cma14g00762 532 Coils Coil 377 401 - -
Cma14g00762 532 MobiDBLite consensus disorder prediction 397 423 - -
Cma14g00762 532 PANTHER BHLH TRANSCRIPTIONAL FACTOR 95 531 - -
Cma14g00762 532 MobiDBLite consensus disorder prediction 311 340 - -
Cma14g00762 532 SMART finulus 344 393 IPR011598 GO:0046983
Cma14g00762 532 CDD ACT_UUR-ACR-like 461 521 - -
Cma14g00762 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Cma14g00762 532 MobiDBLite consensus disorder prediction 311 331 - -
Cma14g00762 532 CDD bHLH_AtAMS_like 341 399 - -
Cma14g00762 532 MobiDBLite consensus disorder prediction 399 420 - -
Cma14g00762 532 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 95 531 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01550 Cma14g00762 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00858 Cma-Chr3:6395689 Cma14g00762 Cma-Chr14:3798446 1.55E-41 dispersed
Cma11g01372 Cma-Chr11:9069112 Cma14g00762 Cma-Chr14:3798446 1.93E-26 dispersed
Cma12g00174 Cma-Chr12:791251 Cma14g00762 Cma-Chr14:3798446 3.29E-44 dispersed
Cma13g00829 Cma-Chr13:6934779 Cma14g00762 Cma-Chr14:3798446 3.01E-129 dispersed
Cma14g00762 Cma-Chr14:3798446 Cma18g00292 Cma-Chr18:1555718 1.65E-148 dispersed
Cma19g00746 Cma-Chr19:7435816 Cma14g00762 Cma-Chr14:3798446 1.97E-26 dispersed
Cma17g00073 Cma-Chr17:358156 Cma14g00762 Cma-Chr14:3798446 8.22E-13 transposed
Cma11g01550 Cma-Chr11:10084392 Cma14g00762 Cma-Chr14:3798446 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36239 PF00010 HLH 2.20E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00762 - - bhj:120082707 810.446