Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00811 ATGCGGATGAGTTGTAATGGTTGCAGAGTTCTTCGCAAAGGTTGCAGTGAAAATTGCAGTATTCGACCTTGTTTGCACTGGATCAAGAGTCCTGATTCTCAAGCCAACGCTACTGTTTTTCTCGCCAAGTTCTACGGCCGTGCTGGACTCATGAACCTTATCAACGCTGGTCCTGATCATCTCCGTCCTGCAATTTTTAGATCTCTTCTCTATGAGGCTTGTGGCCGTATTGTGAATCCAATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAACTCTGTCAGGCGGCTGTTGAGGCCGTTCTTAAAGGTGCTCCGATCACGCCGATTAACTCTGAGGCAGCGGCTACTGGCGATGGACCGCCGTTGAAGGCCTACGATATTCGTCACGTTTCTAAGGATGAAAACTCCGCTGCATCCAACGACGGCGGAGTCAACCGGCGAGTCAAGACTCGGTGCCGGTTCAAGCGGTCTGCGGTGAAGGCGAAAGCGTGTAAAGGAATCTCATCCACCGTGGAAGAGTCGACTCGACGACTGTGTTCCATCGAGTTGAACCGATCGTCAAGCGGCGAGTCGTCGTTGAGTCACCAATCCGACTCGCCACATGTTGAAAACGAGAGCAAAGAAACCGAGAGCATGATTTCAGTATCGACGGCGGAGTTCTCTCCTCCTCCAGTACTGCCAGTTTTATTCCGATCAGAATCCACTTCCGTACAAAAACGTCTAGGTCACGGCGACGGCACTGTTCCAATTCCGCAAAGCGAATTAGCTCTAGAACTGACTCTGGGGATGAAGCCGGTGTCACGTGCCGAGCACGTGATTCCAATGAAGAAGCGGAAGATAGAGGCCGACGTTGGGTTGAGGCCCAATAACGAGGCGTGCAATACTGTATTGGGCCTTGATTTTGCAGCCTAA 921 51.36 MRMSCNGCRVLRKGCSENCSIRPCLHWIKSPDSQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSAASNDGGVNRRVKTRCRFKRSAVKAKACKGISSTVEESTRRLCSIELNRSSSGESSLSHQSDSPHVENESKETESMISVSTAEFSPPPVLPVLFRSESTSVQKRLGHGDGTVPIPQSELALELTLGMKPVSRAEHVIPMKKRKIEADVGLRPNNEACNTVLGLDFAA 306
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
14 4107612 4109213 - CmaCh14G008110.1 Cma14g00811 307794
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00811 306 MobiDBLite consensus disorder prediction 188 202 - -
Cma14g00811 306 MobiDBLite consensus disorder prediction 188 213 - -
Cma14g00811 306 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 302 - -
Cma14g00811 306 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Cma14g00811 306 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cma14g00811 306 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 302 - -
Cma14g00811 306 PIRSF AS2 1 299 IPR017414 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01793 Cma-Chr1:11993723 Cma14g00811 Cma-Chr14:4107612 1.10E-48 dispersed
Cma03g00932 Cma-Chr3:6676809 Cma14g00811 Cma-Chr14:4107612 8.02E-54 dispersed
Cma07g00659 Cma-Chr7:2878344 Cma14g00811 Cma-Chr14:4107612 4.13E-54 dispersed
Cma09g00281 Cma-Chr9:1154490 Cma14g00811 Cma-Chr14:4107612 5.05E-47 dispersed
Cma10g00235 Cma-Chr10:1053099 Cma14g00811 Cma-Chr14:4107612 3.21E-83 dispersed
Cma11g00267 Cma-Chr11:1358315 Cma14g00811 Cma-Chr14:4107612 3.38E-88 dispersed
Cma14g00811 Cma-Chr14:4107612 Cma18g01019 Cma-Chr18:8518054 1.23E-66 dispersed
Cma01g00384 Cma-Chr1:1921974 Cma14g00811 Cma-Chr14:4107612 5.05E-180 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36243 PF03195 LOB 2.60E-24 No_clan Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00811 - - csv:101208245 517.694