Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma14g00811 | ATGCGGATGAGTTGTAATGGTTGCAGAGTTCTTCGCAAAGGTTGCAGTGAAAATTGCAGTATTCGACCTTGTTTGCACTGGATCAAGAGTCCTGATTCTCAAGCCAACGCTACTGTTTTTCTCGCCAAGTTCTACGGCCGTGCTGGACTCATGAACCTTATCAACGCTGGTCCTGATCATCTCCGTCCTGCAATTTTTAGATCTCTTCTCTATGAGGCTTGTGGCCGTATTGTGAATCCAATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAACTCTGTCAGGCGGCTGTTGAGGCCGTTCTTAAAGGTGCTCCGATCACGCCGATTAACTCTGAGGCAGCGGCTACTGGCGATGGACCGCCGTTGAAGGCCTACGATATTCGTCACGTTTCTAAGGATGAAAACTCCGCTGCATCCAACGACGGCGGAGTCAACCGGCGAGTCAAGACTCGGTGCCGGTTCAAGCGGTCTGCGGTGAAGGCGAAAGCGTGTAAAGGAATCTCATCCACCGTGGAAGAGTCGACTCGACGACTGTGTTCCATCGAGTTGAACCGATCGTCAAGCGGCGAGTCGTCGTTGAGTCACCAATCCGACTCGCCACATGTTGAAAACGAGAGCAAAGAAACCGAGAGCATGATTTCAGTATCGACGGCGGAGTTCTCTCCTCCTCCAGTACTGCCAGTTTTATTCCGATCAGAATCCACTTCCGTACAAAAACGTCTAGGTCACGGCGACGGCACTGTTCCAATTCCGCAAAGCGAATTAGCTCTAGAACTGACTCTGGGGATGAAGCCGGTGTCACGTGCCGAGCACGTGATTCCAATGAAGAAGCGGAAGATAGAGGCCGACGTTGGGTTGAGGCCCAATAACGAGGCGTGCAATACTGTATTGGGCCTTGATTTTGCAGCCTAA | 921 | 51.36 | MRMSCNGCRVLRKGCSENCSIRPCLHWIKSPDSQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSAASNDGGVNRRVKTRCRFKRSAVKAKACKGISSTVEESTRRLCSIELNRSSSGESSLSHQSDSPHVENESKETESMISVSTAEFSPPPVLPVLFRSESTSVQKRLGHGDGTVPIPQSELALELTLGMKPVSRAEHVIPMKKRKIEADVGLRPNNEACNTVLGLDFAA | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 4107612 | 4109213 | - | CmaCh14G008110.1 | Cma14g00811 | 307794 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma14g00811 | 306 | MobiDBLite | consensus disorder prediction | 188 | 202 | - | - | |
| Cma14g00811 | 306 | MobiDBLite | consensus disorder prediction | 188 | 213 | - | - | |
| Cma14g00811 | 306 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 40 | 1 | 302 | - | - | |
| Cma14g00811 | 306 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 103 | IPR004883 | - | |
| Cma14g00811 | 306 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
| Cma14g00811 | 306 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 302 | - | - | |
| Cma14g00811 | 306 | PIRSF | AS2 | 1 | 299 | IPR017414 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g01793 | Cma-Chr1:11993723 | Cma14g00811 | Cma-Chr14:4107612 | 1.10E-48 | dispersed | |
| Cma03g00932 | Cma-Chr3:6676809 | Cma14g00811 | Cma-Chr14:4107612 | 8.02E-54 | dispersed | |
| Cma07g00659 | Cma-Chr7:2878344 | Cma14g00811 | Cma-Chr14:4107612 | 4.13E-54 | dispersed | |
| Cma09g00281 | Cma-Chr9:1154490 | Cma14g00811 | Cma-Chr14:4107612 | 5.05E-47 | dispersed | |
| Cma10g00235 | Cma-Chr10:1053099 | Cma14g00811 | Cma-Chr14:4107612 | 3.21E-83 | dispersed | |
| Cma11g00267 | Cma-Chr11:1358315 | Cma14g00811 | Cma-Chr14:4107612 | 3.38E-88 | dispersed | |
| Cma14g00811 | Cma-Chr14:4107612 | Cma18g01019 | Cma-Chr18:8518054 | 1.23E-66 | dispersed | |
| Cma01g00384 | Cma-Chr1:1921974 | Cma14g00811 | Cma-Chr14:4107612 | 5.05E-180 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36243 | PF03195 | LOB | 2.60E-24 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma14g00811 | - | - | csv:101208245 | 517.694 |