Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00821 ATGGCGACGCTAATGTCGGGCTCCAGAGTTCAACCAGCAGCTTGTGTTGTTCTTTCCTCCTCCATCAAGCACCATCTGGGTTTTAATTCCCTTCGTCGTTCCAATTGCTTCTTCTCTCATTTTCACCATTCCTCCTTCTCCTTCAGGCGCTCTGGAGCTAGACGAGCTCTCTCTGTTTCCATGTCCGTTAGCCCTCTTGAAGCCTGTGTCAAAGCTTCCATTACTGTTCCCAACAAGCTCGGCGACTGCCCTTTTTGCCAAAGAGTATTACTGACTTTGGAGGAAAAGCGTCTACCCTATGACCTAAAGTTGGTAGACCTGTCAAACAAGCCAGAATGGTTCTTAGAAATAAGTTCAGAGGGGAAAGTTCCCGTTGTTAAATTTGATGAACAGTGGGTTGCAGATTCAGATGTTATAACACAAACACTGGAAGAGAAGTACCCAAGCCCACCTTTAGCGACCCCTCCTGATAAATCTTCAGTAGGATCAAAGATTTTCTCCACGTTTATTGCTTTTCTAAAGAGCAAGGATCCTAATGATGGAACAGAACAAGCATTACTTAGCGAGCTGAGTTCTTTCGATTCTCACATCAAAGAGAATGGCCCTTTTATCAATGGGGAAGAGATTTCTGCAGCAGACCTGTCACTTGGTCCAAAGTTGTACCATTTAGAAATTGCATTGGGTCACTATAAGAACTGGTCAGTTCCAGACAGCCTACCCTACGTTAAGTCTTACACAAAGAGCATATTTTCAAGAGAATCATTTGCAAAAACTCGTGCCCTTCCTGAGGATGTTATTGCTGGTTGGCGTCCAAAGGTCTTAGTCGCGGCAAATTCTGGGTCGTCAGCTGTCGTCACGCACATAGCTCAATCCCATTTTCTGGCAGCTCTCTCTGTGCCACTGAAAAACCTCAGCCATTCCATTAAACCCCAAACCTCTTCACTCCCACCATTTTTGAGTGCAACCGAGCTTTCACCAAGCCATGCTTCTTCAAATGGCCTTTTCCGGTCCTTCCCTCCTCCATCCTTCTTCTGCTTACAGACTCAATCCCCTTATCTTTACCAAATGCCGGCGTTCTTTTGGCCTCTCCCGCTTTCATTTCCGTCGTCTACAGCAGAGACAATTAGCTGTGGGCAAATTGGATTCATTATTTGCAAGAGATACTATATTCTATTCGTTGTGGGAAATTTCGTTTTGTTATTTGGCATTGTTGCCGCATCAGCGAATGGTGTTTTTACTTCTCCAGAGATAGCAAAGACGTTCGACTTTGCTTCGGAAGAGCGAATATATCGATGGTGGGAATCTCAAGGTTATTTCAGGCCACATTTTGATCAAGATAGTGTTCCGTTTGTGATTTCAATGCCACCTCCCAATGTCACAGGATCACTGCACATGGGACATGCGATGTTTGTGACTCTTGAGGATATTATGGTTAGATACAACCGTATGAAGGGCAGACCAACACTCTGGCTTCCCGGGACTGATCATGCAGGTATTGCTACGCAGTTGGTTGTTGAAAGAATGCTTGCGTCTGAAGGAATAAAAAGGGTTGAATTGGGCAGAGATGAATTTACAAAGCGAGTTTGGGAGTGGAAAGAGAAGTATGGTGGAACTATCACTAATCAAATTAAGAGACTTGGAGCTTCCTGTGATTGGACTAAAGAGCACTTTACCCTTGATGACCAGCTAAGTCGAGCCGTTGTTGAGGCATTTGTTCGACTTCATGAGAGAGGATTGATCTATCAAGGGTCTTACATGGTAAACTGGTCTCCTCATTTGCAAACTGCTGTTTCTGACCTGGAAGTAGAGTACTCTGAAGAATCTGGTACTCTATATCATATTAAGTATCGAGTGGCAGGAGGTTCAAGGAGCGATTACTTGACAGTAGCAACAACTCGTCCTGAAACGTTATTTGGTGATGTAGCTATAGCAGTGCATCCTCAGGATGATCGTTATTCTAAATATGTTGGCATGATGGCAATTGTTCCAATGACGTATGGTCGTCATGTCCCTATCATCTCTGACAAGAATGTTGATAAGGACTTCGGAACTGGTGTGTTAAAGATAAGCCCTGGACATGATCATAATGACTATCTGCTTGCTCGAAAATTTGGTCTCCCTATACTTAATGTGATGAACAAGGATGGTACCCTTAATAAGGTTGCTGGGCTTTACTGTGGTTTAGATCGGTTTGAAGCACGAAAGAAACTGTGGGCGGATTTGGAGGAGACAGGCTTAGCTGTAAAAAAGGAGGCACACACCTTACGAGTACCAAGATCCCAACGTGGAGGAGAAATAATTGAACCTTTAGTGAGCAAACAGTGGTTTATGACCATGGAACCATTGGCTGAAAAAGCCCTTCGTGCTGTTGAAAAAGGAGATTTAACCATTATCCCCGAGAGATTTGAGAAGATTTACAATCACTGGCTGTCAAATATTAAGGACTGGTGTATAAGCAGGCAGCTATGGTGGGGACATCGTATACCAGTTTGGTACATTGTGGGAAAAAATCCGGAAGAAGACTACATAGTTGCTAGGAATGCCGATGAGGCTCATGAGCAAGCTCACAAGAAATATGGGAAGGGTGTAGAAATATACCAAGATCCAGACGTACTTGACACTTGGTTCTCAAGTGCGTTATGGCCTTTTAGTACGCTTGGATGGCCAGATGAGACAGCTGAGGATTTTAAGCGGTTCTATCCAACAACAATGCTTGAAACTGGGCATGATATACTATTCTTTTGGGTGGCGAGGATGGTAATGCTGGGAATTGAGTTTACTGGCACTGTTCCATTTTCTTATATTTATCTCCATGGACTCATTCGGGACTCTCAGGGACGGAAGATGTCTAAAACACTAGGAAATGTGATAGATCCACTTGATACAATTAAAGAATTTGGCACTGATGCTTTACGATTCACACTTGCTTTAGGAACTGCCGGTCAGGATCTTAATCTATCCACCGAGAGGTTGACTTCCAATAAGGCATTCACTAATAAATTGTGGAATGCTGGAAAGTTCATATTGCAGAATTTACCTACACAGAATGATTCGCAATCTTGGAAATCCATACTGAGTTATGAGTTTGAGAAAGAGGATTGTCTGCTCAAGTTACCTTTACCAGAATGCTGGATTGTCTCAGAACTTCATTCCCTAATAGACGTGGTCACCGCTAGCTATGATAAATTTTTCTTCGGAGATGTTGGCAGGGATATATATAACTTTTTCTGGGGTGATTTCGCAGATTGGTACATTGAAGCCAGTAAAGCTCGCCTTTATCAATCTGGAGGCAATTCCGTTGCTTTGGCACAAGCTGTGCTGTTGTATGTTTTTGAAAATATTCTCAAACTACTACATCCTTTCATGCCGTTTGTGACAGAGGAACTTTGGCAGGCACTTCCCCATCGCAAAGAAGCTTTAATCATATCTCCTTGGCCACAGATTTTACTTCCAAGGCAGGCCGGTGCAGTTAAGAAATTTGAGAACCTAAAGTTGTTGACGAAAGCGATTCGGAATGCTAGAGCAGAGTATTCCGTTGAGCCAGCAAAGCGTATATCTGCTTCTATAGTTGCAAGTGAAGAAGTCAATCAATATATATCTGAAGAGAAGGAGGTTTTAGCTCTTCTTACACGATTGGATCTACACAATGTTCATTTTGCAAATGCTCCTCCAGGCATGTCTATTACTAGAAGTGTTGAAGCATTATTTTGCTTAATGAATTTTTTCACAGGAAATGTAGATCAATCAGTGCACCTTGTAGCTGGTGAAGGGCTAGAGGCTTATCTACCTCTTGCTGACATGGTTGATATCTCGGCTGAACTCCAACGCTTATCGAAGCGCCTTACGAAAATGAAGACAGAATATGATGGATTTATAGCTCGCCTCAATTCTCCAAGCTTTGTGGAGAAAGCTCCCGAGGATATCGTCCGTGGGGTCAGAGAAAAGGCCGACGAAGCAAAAGAGAAGATAGCTCTCACCGAAAAGCGCCTCTCTCTCCTCAGATCAACTGTTCCAGTTCCTGATTGTTGA 4029 43.29 MATLMSGSRVQPAACVVLSSSIKHHLGFNSLRRSNCFFSHFHHSSFSFRRSGARRALSVSMSVSPLEACVKASITVPNKLGDCPFCQRVLLTLEEKRLPYDLKLVDLSNKPEWFLEISSEGKVPVVKFDEQWVADSDVITQTLEEKYPSPPLATPPDKSSVGSKIFSTFIAFLKSKDPNDGTEQALLSELSSFDSHIKENGPFINGEEISAADLSLGPKLYHLEIALGHYKNWSVPDSLPYVKSYTKSIFSRESFAKTRALPEDVIAGWRPKVLVAANSGSSAVVTHIAQSHFLAALSVPLKNLSHSIKPQTSSLPPFLSATELSPSHASSNGLFRSFPPPSFFCLQTQSPYLYQMPAFFWPLPLSFPSSTAETISCGQIGFIICKRYYILFVVGNFVLLFGIVAASANGVFTSPEIAKTFDFASEERIYRWWESQGYFRPHFDQDSVPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWLPGTDHAGIATQLVVERMLASEGIKRVELGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWTKEHFTLDDQLSRAVVEAFVRLHERGLIYQGSYMVNWSPHLQTAVSDLEVEYSEESGTLYHIKYRVAGGSRSDYLTVATTRPETLFGDVAIAVHPQDDRYSKYVGMMAIVPMTYGRHVPIISDKNVDKDFGTGVLKISPGHDHNDYLLARKFGLPILNVMNKDGTLNKVAGLYCGLDRFEARKKLWADLEETGLAVKKEAHTLRVPRSQRGGEIIEPLVSKQWFMTMEPLAEKALRAVEKGDLTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKNPEEDYIVARNADEAHEQAHKKYGKGVEIYQDPDVLDTWFSSALWPFSTLGWPDETAEDFKRFYPTTMLETGHDILFFWVARMVMLGIEFTGTVPFSYIYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFILQNLPTQNDSQSWKSILSYEFEKEDCLLKLPLPECWIVSELHSLIDVVTASYDKFFFGDVGRDIYNFFWGDFADWYIEASKARLYQSGGNSVALAQAVLLYVFENILKLLHPFMPFVTEELWQALPHRKEALIISPWPQILLPRQAGAVKKFENLKLLTKAIRNARAEYSVEPAKRISASIVASEEVNQYISEEKEVLALLTRLDLHNVHFANAPPGMSITRSVEALFCLMNFFTGNVDQSVHLVAGEGLEAYLPLADMVDISAELQRLSKRLTKMKTEYDGFIARLNSPSFVEKAPEDIVRGVREKADEAKEKIALTEKRLSLLRSTVPVPDC 1342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4147107 4171491 + CmaCh14G008210.1 Cma14g00821 307804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00821 1342 CDD GST_C_DHAR 152 272 - -
Cma14g00821 1342 Gene3D HUPs 725 944 IPR014729 -
Cma14g00821 1342 Gene3D - 945 1180 - -
Cma14g00821 1342 Gene3D - 654 717 IPR009008 GO:0002161|GO:0006418
Cma14g00821 1342 Gene3D - 1262 1333 IPR037118 -
Cma14g00821 1342 SUPERFAMILY tRNA-binding arm 1269 1333 IPR010978 GO:0000166
Cma14g00821 1342 Coils Coil 1309 1336 - -
Cma14g00821 1342 Gene3D HUPs 420 616 IPR014729 -
Cma14g00821 1342 SUPERFAMILY GST C-terminal domain-like 146 272 IPR036282 -
Cma14g00821 1342 Pfam Anticodon-binding domain of tRNA ligase 1044 1186 IPR013155 GO:0004812|GO:0006418
Cma14g00821 1342 Coils Coil 1267 1287 - -
Cma14g00821 1342 CDD Anticodon_Ia_Val 986 1133 IPR033705 -
Cma14g00821 1342 SUPERFAMILY Thioredoxin-like 82 149 IPR036249 -
Cma14g00821 1342 Pfam tRNA synthetases class I (I, L, M and V) 429 987 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cma14g00821 1342 SFLD Glutathione Transferase (cytosolic) 83 249 IPR040079 -
Cma14g00821 1342 TIGRFAM valS: valine--tRNA ligase 419 1315 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cma14g00821 1342 Pfam Valyl tRNA synthetase tRNA binding arm 1269 1333 IPR019499 GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438
Cma14g00821 1342 CDD GST_N_family 83 144 - -
Cma14g00821 1342 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 999 1283 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cma14g00821 1342 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 605 758 IPR009008 GO:0002161|GO:0006418
Cma14g00821 1342 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 457 468 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cma14g00821 1342 Gene3D - 153 275 - -
Cma14g00821 1342 SUPERFAMILY Nucleotidylyl transferase 424 993 - -
Cma14g00821 1342 PANTHER VALYL-TRNA SYNTHETASE, ISOFORM C 416 1335 - -
Cma14g00821 1342 CDD ValRS_core 449 986 - -
Cma14g00821 1342 Pfam Glutathione S-transferase, N-terminal domain 82 151 IPR004045 -
Cma14g00821 1342 Hamap Valine--tRNA ligase [valS]. 417 1334 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cma14g00821 1342 Gene3D Glutaredoxin 65 152 - -
Cma14g00821 1342 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 73 151 IPR004045 -
Cma14g00821 1342 PANTHER VALYL-TRNA SYNTHETASES 416 1335 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cma14g00821 1342 PRINTS Valyl-tRNA synthetase signature 900 918 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cma14g00821 1342 PRINTS Valyl-tRNA synthetase signature 646 663 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cma14g00821 1342 PRINTS Valyl-tRNA synthetase signature 868 889 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cma14g00821 1342 PRINTS Valyl-tRNA synthetase signature 762 775 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cma14g00821 1342 PRINTS Valyl-tRNA synthetase signature 450 461 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cma14g00821 1342 Gene3D - 617 653 IPR009008 GO:0002161|GO:0006418
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01048 Cma-Chr2:6236211 Cma14g00821 Cma-Chr14:4147107 0 dispersed
Cma04g00236 Cma-Chr4:1154973 Cma14g00821 Cma-Chr14:4147107 2.42E-79 dispersed
Cma04g01211 Cma-Chr4:6178882 Cma14g00821 Cma-Chr14:4147107 2.08E-82 dispersed
Cma14g00821 Cma-Chr14:4147107 Cma14g01619 Cma-Chr14:12143025 5.32E-17 dispersed
Cma14g00821 Cma-Chr14:4147107 Cma04g00237 Cma-Chr4:1157423 1.84E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00821 K01873 - csv:101207263 1799.64