Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00866 ATGATTGATGCAACAAAAAGCAAATTGAAGGAAACCGGAAGAAAAGGGAAAAGGCGAAGATTTGAATATCAAAATTTTCCATTTCAACCATTTCAAACGTCTGACGCCGAATTGAATATGCTCCTATTTCCCACCGAGACCAAAATTCCAGTTGTGATTCGTGTTGTGCGATACGAAATGATTCACAGGAAATTGAAGTTCAACAACGTAGCATGGGGAATCAACCTCAGATTCTTCGTCCTTCCTCTCATTCCATTGGCTCCCTTTCTGCATTTGGCTGCGCTACTAAAAGTTTTCGCGGCTCCCGTTTGTGGGAATTTCAAGTTCTACTTCTTCCGTTTAGTGGATATCTCTTACTGGTTGGTCAGGATGGATTTTATGATGGAAGGTCGTGGGAGTTATGGCGGTGGGTCAGGTGATGAACAAGAAGCTTCTAATGATCGCAAGGGGAAAAAGACTTACCATCGTCATAATCCTTACCAGATTCAGCAACTTGAATCGGCATGCCCACACCCTGATGAAAATCAGCGGCGCCAGCTGAGTCGAGAGCTTGGTCTTGAGACCAAACAGATCAAATTTTGGTTTCAAAACAAGAGGACTCAAACTAAGACTCAGAATGAGCGAGCAGACAACTCTTCACTTCGGACAGAGAATGAAAAGATTCAATGTGAAAATCTTGCAATTAGAGAAGCATTGAGGAATGTCATCTGTCCATCCTGTGGCGGTCCACCGTTTGGCGAAGAAGAACGGCAGCGCAATCTCCATAAACTGCGTCTTGAAAACGCTCACTTAAAAGAAGAGCATGAAAAAGTGTCTAACCTTCTTGCCAAGTACATTGGAAAACCGATATCACAACTTGAATCACTATTGCCTGTTCTTGGATCTTCACTCGATTTGTCACCGAGAAGTTCCCTTACCCAAATAGTTCTAAGTCCTGCAGTGAATCTTATGTCTGATCCTGTAATATTAGATAGAACAGCAACACCTTATCAATCAAGAGGTATTAATGATTTGGAAAACGCTCTCATGATGGAAACTGCTGCAACTGCCTTGGAAGAGTTAATCAGACTTTTGAGGATCGATGAGCCTTTGTGGATGAAGATCCTCAATGACGGGAGGGGTGTTCTTAATCGTGACAGCTATGAAAAAATATTTCCTAGACCCAATCACTTCAAATCTTCTAACGCTCGTACTGAATCCTCGAAAGCTTCAGGAGTGGTGACAATGAGTGCAATGCAATTGGTTGATGCTTTTTTAGATGCGGATAAATGGGCGGATCTTTTTCCAACTGTCATTATAAATGCAGAGACGTTTCATATTATTGACCCCGGGATGCCTGGAAATCGCAGTGGCGCTTTGCAGTTGATGTATCAACAAATGCACATATTTTCACCACTTGTGTCGCCTCGAGATTTCTGCTTCCTTCGACATTGTCAGCAGATCGAGCATGGTGTCTGGGTAATAGTGGACGTTTCATATGAATTTTTGAAGGATTGTGTCACATCTGCCCGCTGCTGGAGGCTTCCTTCTGGGTGCATGATTCAAGAAATGCCCAATGGTTGCTCTAAGGTTACCTGGGTCGAGCATGTGGAAGTGGATGATAAAACACAAACCCACCGGCTATATCGGGATCTTGTGTTCAATACTACGGCATATGGAGCTGAACGATGGGTTTTCACTCTTCAAAGGATGTGTGAGAGATTGGCTTACACATTCAGGGATTGTGCACCTAGCCATGAACTTGGAGGAGTGTTAACTTCTAATGAAGGTAGGAGGAGCATCATGAAGCTGTCACACAGAATGGTAAAAAATTTCTGTGGCGTACTGAGCATGTCAGGTAAATTAGATTTCCCCCAGCTATCCGAAGTGAACAACAGCGGTGTTCGAATCTCTGTTCGGATTAGCTCCGAGCTGGGGCAGCCCAGTGGGACAATCGTTAGTGCAGCGACATCCCTTTGGCTTCCCCTACAACCTGAAAGCATCTTCAATTTCTTCAAGGATGAAAAGGCCAGAGTTCAGTGGGATGTTCTGTCTAATGGAAGCCCAGTACATGAAATTGCACACATCTTAACAGGAGTTCATCCCGGAAACTCGATATTGATAATTCGGCCGTTCGTCCCTACTGAGAACAACATGCTGATTCTTCAAGAAAGCTGCATAGATCCACTAGGATCCTTGGTCATTTATGCACCCATCGACATGCCTGCTATGAACATTGCAACAAGCGGTCAGGACCCATCGGAGATACTGATACTTCCATCGGGGTTCGTAATCACGGGGGATGGCCGTTCTCATTCAGGAGTCGGAGCTTCAACCAGTGCAACCTCGGGGAGGCCGAGCGGGTCTCTGTTAACGGTAGCGTTCCAGATATTGGTGTCGAGTGTATCGTCTTCAAAACAGCTGAATGTGGAGTCTGTAGCAACAGTGAATACTCTCATCAGTGCCACAGTTCAGAGGATAAAGGCTGCGTTGAATTGCTCTGGCTTGGATTGA 2493 44.73 MIDATKSKLKETGRKGKRRRFEYQNFPFQPFQTSDAELNMLLFPTETKIPVVIRVVRYEMIHRKLKFNNVAWGINLRFFVLPLIPLAPFLHLAALLKVFAAPVCGNFKFYFFRLVDISYWLVRMDFMMEGRGSYGGGSGDEQEASNDRKGKKTYHRHNPYQIQQLESACPHPDENQRRQLSRELGLETKQIKFWFQNKRTQTKTQNERADNSSLRTENEKIQCENLAIREALRNVICPSCGGPPFGEEERQRNLHKLRLENAHLKEEHEKVSNLLAKYIGKPISQLESLLPVLGSSLDLSPRSSLTQIVLSPAVNLMSDPVILDRTATPYQSRGINDLENALMMETAATALEELIRLLRIDEPLWMKILNDGRGVLNRDSYEKIFPRPNHFKSSNARTESSKASGVVTMSAMQLVDAFLDADKWADLFPTVIINAETFHIIDPGMPGNRSGALQLMYQQMHIFSPLVSPRDFCFLRHCQQIEHGVWVIVDVSYEFLKDCVTSARCWRLPSGCMIQEMPNGCSKVTWVEHVEVDDKTQTHRLYRDLVFNTTAYGAERWVFTLQRMCERLAYTFRDCAPSHELGGVLTSNEGRRSIMKLSHRMVKNFCGVLSMSGKLDFPQLSEVNNSGVRISVRISSELGQPSGTIVSAATSLWLPLQPESIFNFFKDEKARVQWDVLSNGSPVHEIAHILTGVHPGNSILIIRPFVPTENNMLILQESCIDPLGSLVIYAPIDMPAMNIATSGQDPSEILILPSGFVITGDGRSHSGVGASTSATSGRPSGSLLTVAFQILVSSVSSSKQLNVESVATVNTLISATVQRIKAALNCSGLD 830
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
14 4462605 4467263 - CmaCh14G008660.1 Cma14g00866 307849
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00866 830 SUPERFAMILY Bet v1-like 338 569 - -
Cma14g00866 830 ProSitePatterns 'Homeobox' domain signature. 180 203 IPR017970 GO:0000981|GO:0006355
Cma14g00866 830 ProSiteProfiles START domain profile. 336 570 IPR002913 GO:0008289
Cma14g00866 830 CDD START_ArGLABRA2_like 341 566 - -
Cma14g00866 830 CDD homeodomain 151 206 IPR001356 GO:0003677
Cma14g00866 830 Gene3D - 345 545 IPR023393 -
Cma14g00866 830 MobiDBLite consensus disorder prediction 134 154 - -
Cma14g00866 830 SUPERFAMILY Homeodomain-like 136 206 IPR009057 -
Cma14g00866 830 SMART START_1 345 567 IPR002913 GO:0008289
Cma14g00866 830 SUPERFAMILY Bet v1-like 589 789 - -
Cma14g00866 830 Pfam Homeodomain 151 203 IPR001356 GO:0003677
Cma14g00866 830 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG12-RELATED 140 825 - -
Cma14g00866 830 Pfam START domain 347 567 IPR002913 GO:0008289
Cma14g00866 830 Coils Coil 247 274 - -
Cma14g00866 830 Gene3D - 137 222 - -
Cma14g00866 830 SMART HOX_1 150 209 IPR001356 GO:0003677
Cma14g00866 830 ProSiteProfiles 'Homeobox' domain profile. 145 205 IPR001356 GO:0003677
Cma14g00866 830 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 140 825 IPR042160 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00755 Cma-Chr1:4065459 Cma14g00866 Cma-Chr14:4462605 0 dispersed
Cma14g00866 Cma-Chr14:4462605 Cma17g00018 Cma-Chr17:72796 0 dispersed
Cma14g00866 Cma-Chr14:4462605 Cma13g01095 Cma-Chr13:8246548 0 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36250 PF01852 START 1.60E-38 CL0209 Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00866 K09338 - csv:101205899 1278.08