Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00940 ATGGAGGAGGACAAGAAGAAGAAAAAGGAAGAGATTATCAAGTCGGAGGATACTAGCACAAGCGGCGGCGGCGGCGGGATTTTCCCATTTTCCGATGAAATGAGATCAAACGGATTCTTCGATTTCCCAGATGGTGAAAAATGTTCTGTTGCCTTCCTGGAGCTGCTTGGTCTTAAGAATCATGAATTCAAGGGCTATTCTTCCCACGTTTTAAATCCTCCGGCCACCCCCAATTGTTCCTCCTCCGTCTCTTCCGCCTCTACCGATGCCGTTAACTACAACCCCACCGCCGTCCACGACAACCCACAACAACAACAACAACAAAATCCCACTAAAAAATTGAACAAAAAGGTGAAGAAGAAGAAGGAGAAGAGAGAGAAGGAGGGAAGATTTGCATTCATGACGAAGAGTGAAGTGGATCATCTAGAAGATGGGTATCGATGGAGGAAGTACGGCCAAAAAGCTGTCAAAAACAGCCCTTTTCCCAGGAGCTATTATCGGTGTACCACTCCAACATGCAATGTGAAGAAGAGAGTGGAGCGATGTTCCAATGATCCAACCATCCTGGTCACCACCTACGAAGGCCAACACACTCACCCAACCCCAATCCTTCTTCCACCCCCACCATCCACTCCACCCTGCATCCATCTTCCACCCATCCCCTGCCTTCCACCTACCAACAACAATCATGATGGCGACATTATTGGAGCGATGTGTGATGAGTACACACAAAACCCGGCGTTCTTGAATTCCCAGCATTTAGAAGCGAATTACAACATGAACAACCTCATAGGAGCAAGGAAGGCGGCGGCCGGAATGCTGCAGCAGAAACGGTTGTGCAACCCAAATGCTACATTTCTGGTAGATCACGGGCTGCTTCAAGATGTGATTCCTGCCCACATGCTCAAACAGGAGTGA 918 48.47 MEEDKKKKKEEIIKSEDTSTSGGGGGIFPFSDEMRSNGFFDFPDGEKCSVAFLELLGLKNHEFKGYSSHVLNPPATPNCSSSVSSASTDAVNYNPTAVHDNPQQQQQQNPTKKLNKKVKKKKEKREKEGRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTPTCNVKKRVERCSNDPTILVTTYEGQHTHPTPILLPPPPSTPPCIHLPPIPCLPPTNNNHDGDIIGAMCDEYTQNPAFLNSQHLEANYNMNNLIGARKAAAGMLQQKRLCNPNATFLVDHGLLQDVIPAHMLKQE 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4878868 4880895 + CmaCh14G009400.1 Cma14g00940 307923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00940 305 SMART WRKY_cls 142 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g00940 305 MobiDBLite consensus disorder prediction 1 30 - -
Cma14g00940 305 Gene3D WRKY domain 126 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma14g00940 305 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 62 226 IPR044810 GO:0003700
Cma14g00940 305 MobiDBLite consensus disorder prediction 75 127 - -
Cma14g00940 305 MobiDBLite consensus disorder prediction 1 16 - -
Cma14g00940 305 SUPERFAMILY WRKY DNA-binding domain 134 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma14g00940 305 MobiDBLite consensus disorder prediction 75 112 - -
Cma14g00940 305 Pfam WRKY DNA -binding domain 143 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g00940 305 ProSiteProfiles WRKY domain profile. 137 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma14g00940 305 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 62 226 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma14g00940 Cma17g01021 CCT
Cma08g00480 Cma14g00940 CCT
Cma08g00480 Cma14g00940 ECH
Cma14g00940 Cma17g01021 ECH
Cma01g00279 Cma14g00940 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00940 Cma-Chr14:4878868 Cma08g01289 Cma-Chr8:7800804 1.18E-44 dispersed
Cma01g00279 Cma-Chr1:1325486 Cma14g00940 Cma-Chr14:4878868 1.77E-84 wgd
Cma14g00940 Cma-Chr14:4878868 Cma17g00379 Cma-Chr17:2109793 2.98E-51 wgd
Cma14g00940 Cma-Chr14:4878868 Cma17g01021 Cma-Chr17:7412849 1.19E-42 wgd
Cma14g00940 Cma-Chr14:4878868 Cma08g00480 Cma-Chr8:2725379 7.61E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36256 PF03106 WRKY 1.00E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00940 - - cmo:103489912 306.99