Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00958 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTATGGTATGAGTAGCATGGACTTGAGGGCTGCTGTTGGTAAGCGGAGTTTGGAATGGAATTTGAATGATTGGAAATGGGATGGAGATCTCTTCATTGCTACGCCATTAAACACTGTGGAATCTGATCATTTGAACAGGCAGCTATTTCCAATTGTCTCTGGGATTCCCTTGACAACAGGGGGCTCTTCGAACAGTTCTTCGTCTTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAACGGAGGAGGATTAATGGTATAGAAGATGAGAATCTTAATGATGAAGCGCGTAGTTTGAGTTTGAAGATTGGTGGAAATGTTTCTCAGATTGTTGAGAGAGATGCTGGGAGTTGGGAAGGGAGTAGTGGGAAGAAGAGTAAGTTGGGTGGGGGAGCTTCAAATCGTGCTGTTTGTCAAGTAGAAGACTGTGGAGCTGATCTGAGCAATGAAAAAGAGTATCATAGACGACATAAAGTTTGTGAAACGCATTCTAAGGCAAGCAATGCGCTTGTTGCTAATGTTATGCAGCGGTTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAAAGAAGTTGCCGCAGGCGATTGGCTGGCCACAATAAGCGCAGAAGAAAAATTAATCCGGATAATGTTGTGAATGGAAACTCTCCACCTGATGAGCAGACTAGTAGTTATTTATTGTTGACTCTATTGCGAATACTTGCAAATTTTCACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAACCCTTGCCTGCCAATCTAGTGAACACGGGGGAAAGAACCTAACTGGCATTCTGCATGAACCTCAGAAATTGCTGAACAATGGGGCATTGATTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAACGGTCCACCGGTACCGTTGAGGTCGTCTAAACAACACGACACGATACCTATATCTGAAGCACCAGTACAAGCCATTGGTAGGGGTGGAGATACACCAGCTGTATCTTGTATTAAACCAAGCACCTCAAACAGCCCTCCTGCATATTCAGAAATCAGGGACAGTCAAGTTGGCCAATGCAAAATGATGAACTTTGATCTAAATGATGCTTATGTTGACTCAGACGATGGCATGGAAGACATTGAGAGACAAGCACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGCACAGATCGCATCATTTTGAAACTATTTGGGAAAGCACCAAATGATTTTCCTCACGTTTTGCGAGCTCAGGTTCTAGATTGGTTATCACACAGTCCTACAGAGATTGAGAGCTATATCAGACCTGGTTGTGTTGTTCTAACCGTATACACACGACAGACTGAGGCTGCTTGGGACGATCTTTGTCACGACCTCAGTACCAGTTTTAATAGCCTTCTCGATGTTTCGGACGACGCTTTCTGGAGAACTGGATGGGTTTACGTTCGAGTTCAGCATCAAATAGCTTTCGTTTATCAAGGTCGGGTCGTGGTTGACACATCCTTGCCTCTTAGAAACAAGAATTACTGTAGAATCACAAGTGTGAACCCAGTGGCTGTTTCTACGTCTAAGAAGGCTATATTTTCAGTTAAAGGAAGAAACTTGACACAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTGACTCAGGAAGCTTCTGATGAGCCAACTGAACGTGACGATAACTTGAACGCGCAAGATGACAGTCGATGTGTTACCTTTTCCTGCTCTATTCCTGTCGTCTATGGAAGGGGATTCATCGAGGTTGAAGATGATGGATTTAGCAGCAGCTTCTTTCCTTTTATAGTTGCAGAGGAGGATATTTGTTCTGAGATTTGCACACTTCAGAGTGCATTAGAATTGACGGAAACATGTTCGAATTCCGGGGAAACGGAAGAACTGGAAGGAAGGAGTAATGCAATGGAGTTCATTCATGAAATTGGTTGGCTGTTTCATAGGAATCAATTGAAGTCTAGATTAGGTGACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTTATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTGGATGTTCTTCTTGATGGGACCGTGGATGCTGGAGGACACTCATCCTTGAATCTTGCATTGATGGATATGAGTCTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCACTGGTTGAGCTCCTTTTGGTATATCCCTCAAAAGTGAAGGATACATCACGTGCTGATAGCTTCCTGTTTAGACCGAATGTCGTAGGTCCGGCCGGGTTGACCCCTCTTCACATTGCAGCTGGTAAAGATGACTCCGAGGACGTTCTCGATGCATTAACTAACGACCCCGGAATGGTGGGAGTTGAGGCTTGGAAGAGCGCTCGAGACAGCACGGGGTCAACACCGGAGGATTATGCGCGTTTACGTGGGCATTACTCGTATATTCGGCTTGTGCAGAGGAAAATAAACAAGAGATCTGCAGCTGAGCATGTAGTGGTGGAGATTCCTCCTAGTAGTGTATCAGATGGTAGGTGGAATGAGAAGCAGAACACTGATATGAGCTCATCCAGGTTTGAGATTGGTAGGACAGAAGTAAAACATTGCAGGCAGTGTGTGAGAAAACCGGTGCGTTGTGGAACATCATCGAGCGCGTCTCTGGTGTACAGACCGGCGATGCTTTCGATGGTGGCGATTGCTGCTGTGTGTGTGTGTGTGGCACTCCTATTCAAAAGCTCGCCCGAGGTAATGTATTTGTATGGAGCTATGAAGTTGATATTGAGTAGAGAACCTGTAATGAGTTCCAGATTGATGATATGA 3024 44.74 MEAGYGGEACQLYGMSSMDLRAAVGKRSLEWNLNDWKWDGDLFIATPLNTVESDHLNRQLFPIVSGIPLTTGGSSNSSSSCSDEANMGIEKGKREVEKRRRINGIEDENLNDEARSLSLKIGGNVSQIVERDAGSWEGSSGKKSKLGGGASNRAVCQVEDCGADLSNEKEYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLLRILANFHSNGSNQTTDQDLLSHLIRTLACQSSEHGGKNLTGILHEPQKLLNNGALIGKSDLVSTFLSNGPPVPLRSSKQHDTIPISEAPVQAIGRGGDTPAVSCIKPSTSNSPPAYSEIRDSQVGQCKMMNFDLNDAYVDSDDGMEDIERQALPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTVYTRQTEAAWDDLCHDLSTSFNSLLDVSDDAFWRTGWVYVRVQHQIAFVYQGRVVVDTSLPLRNKNYCRITSVNPVAVSTSKKAIFSVKGRNLTQPTTRLLCAIEGKYLTQEASDEPTERDDNLNAQDDSRCVTFSCSIPVVYGRGFIEVEDDGFSSSFFPFIVAEEDICSEICTLQSALELTETCSNSGETEELEGRSNAMEFIHEIGWLFHRNQLKSRLGDLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLLDGTVDAGGHSSLNLALMDMSLLHRAVRKNSRSLVELLLVYPSKVKDTSRADSFLFRPNVVGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAEHVVVEIPPSSVSDGRWNEKQNTDMSSSRFEIGRTEVKHCRQCVRKPVRCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVMYLYGAMKLILSREPVMSSRLMI 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4968536 4974850 - CmaCh14G009580.1 Cma14g00958 307941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00958 1007 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Cma14g00958 1007 SUPERFAMILY Ankyrin repeat 781 886 IPR036770 -
Cma14g00958 1007 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Cma14g00958 1007 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Cma14g00958 1007 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 992 - -
Cma14g00958 1007 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 992 IPR044817 GO:0003677
Cma14g00958 1007 MobiDBLite consensus disorder prediction 420 455 - -
Cma14g00958 1007 Pfam SBP domain 156 229 IPR004333 GO:0003677
Cma14g00958 1007 Gene3D - 739 893 IPR036770 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00262 Cma14g00958 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02053 Cma-Chr1:13036777 Cma14g00958 Cma-Chr14:4968536 1.04E-67 dispersed
Cma08g00864 Cma-Chr8:5324132 Cma14g00958 Cma-Chr14:4968536 6.11E-34 dispersed
Cma09g00010 Cma-Chr9:66151 Cma14g00958 Cma-Chr14:4968536 7.96E-36 dispersed
Cma11g01915 Cma-Chr11:12656696 Cma14g00958 Cma-Chr14:4968536 6.12E-36 dispersed
Cma13g00633 Cma-Chr13:6048123 Cma14g00958 Cma-Chr14:4968536 4.88E-35 dispersed
Cma14g00958 Cma-Chr14:4968536 Cma18g00310 Cma-Chr18:1655316 2.09E-31 dispersed
Cma01g00262 Cma-Chr1:1239826 Cma14g00958 Cma-Chr14:4968536 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36257 PF03110 SBP 1.80E-29 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00958 - - csv:101203103 1748.41