Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g00958 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTATGGTATGAGTAGCATGGACTTGAGGGCTGCTGTTGGTAAGCGGAGTTTGGAATGGAATTTGAATGATTGGAAATGGGATGGAGATCTCTTCATTGCTACGCCATTAAACACTGTGGAATCTGATCATTTGAACAGGCAGCTATTTCCAATTGTCTCTGGGATTCCCTTGACAACAGGGGGCTCTTCGAACAGTTCTTCGTCTTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAACGGAGGAGGATTAATGGTATAGAAGATGAGAATCTTAATGATGAAGCGCGTAGTTTGAGTTTGAAGATTGGTGGAAATGTTTCTCAGATTGTTGAGAGAGATGCTGGGAGTTGGGAAGGGAGTAGTGGGAAGAAGAGTAAGTTGGGTGGGGGAGCTTCAAATCGTGCTGTTTGTCAAGTAGAAGACTGTGGAGCTGATCTGAGCAATGAAAAAGAGTATCATAGACGACATAAAGTTTGTGAAACGCATTCTAAGGCAAGCAATGCGCTTGTTGCTAATGTTATGCAGCGGTTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAAAGAAGTTGCCGCAGGCGATTGGCTGGCCACAATAAGCGCAGAAGAAAAATTAATCCGGATAATGTTGTGAATGGAAACTCTCCACCTGATGAGCAGACTAGTAGTTATTTATTGTTGACTCTATTGCGAATACTTGCAAATTTTCACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAACCCTTGCCTGCCAATCTAGTGAACACGGGGGAAAGAACCTAACTGGCATTCTGCATGAACCTCAGAAATTGCTGAACAATGGGGCATTGATTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAACGGTCCACCGGTACCGTTGAGGTCGTCTAAACAACACGACACGATACCTATATCTGAAGCACCAGTACAAGCCATTGGTAGGGGTGGAGATACACCAGCTGTATCTTGTATTAAACCAAGCACCTCAAACAGCCCTCCTGCATATTCAGAAATCAGGGACAGTCAAGTTGGCCAATGCAAAATGATGAACTTTGATCTAAATGATGCTTATGTTGACTCAGACGATGGCATGGAAGACATTGAGAGACAAGCACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGCACAGATCGCATCATTTTGAAACTATTTGGGAAAGCACCAAATGATTTTCCTCACGTTTTGCGAGCTCAGGTTCTAGATTGGTTATCACACAGTCCTACAGAGATTGAGAGCTATATCAGACCTGGTTGTGTTGTTCTAACCGTATACACACGACAGACTGAGGCTGCTTGGGACGATCTTTGTCACGACCTCAGTACCAGTTTTAATAGCCTTCTCGATGTTTCGGACGACGCTTTCTGGAGAACTGGATGGGTTTACGTTCGAGTTCAGCATCAAATAGCTTTCGTTTATCAAGGTCGGGTCGTGGTTGACACATCCTTGCCTCTTAGAAACAAGAATTACTGTAGAATCACAAGTGTGAACCCAGTGGCTGTTTCTACGTCTAAGAAGGCTATATTTTCAGTTAAAGGAAGAAACTTGACACAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTGACTCAGGAAGCTTCTGATGAGCCAACTGAACGTGACGATAACTTGAACGCGCAAGATGACAGTCGATGTGTTACCTTTTCCTGCTCTATTCCTGTCGTCTATGGAAGGGGATTCATCGAGGTTGAAGATGATGGATTTAGCAGCAGCTTCTTTCCTTTTATAGTTGCAGAGGAGGATATTTGTTCTGAGATTTGCACACTTCAGAGTGCATTAGAATTGACGGAAACATGTTCGAATTCCGGGGAAACGGAAGAACTGGAAGGAAGGAGTAATGCAATGGAGTTCATTCATGAAATTGGTTGGCTGTTTCATAGGAATCAATTGAAGTCTAGATTAGGTGACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTTATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTGGATGTTCTTCTTGATGGGACCGTGGATGCTGGAGGACACTCATCCTTGAATCTTGCATTGATGGATATGAGTCTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCACTGGTTGAGCTCCTTTTGGTATATCCCTCAAAAGTGAAGGATACATCACGTGCTGATAGCTTCCTGTTTAGACCGAATGTCGTAGGTCCGGCCGGGTTGACCCCTCTTCACATTGCAGCTGGTAAAGATGACTCCGAGGACGTTCTCGATGCATTAACTAACGACCCCGGAATGGTGGGAGTTGAGGCTTGGAAGAGCGCTCGAGACAGCACGGGGTCAACACCGGAGGATTATGCGCGTTTACGTGGGCATTACTCGTATATTCGGCTTGTGCAGAGGAAAATAAACAAGAGATCTGCAGCTGAGCATGTAGTGGTGGAGATTCCTCCTAGTAGTGTATCAGATGGTAGGTGGAATGAGAAGCAGAACACTGATATGAGCTCATCCAGGTTTGAGATTGGTAGGACAGAAGTAAAACATTGCAGGCAGTGTGTGAGAAAACCGGTGCGTTGTGGAACATCATCGAGCGCGTCTCTGGTGTACAGACCGGCGATGCTTTCGATGGTGGCGATTGCTGCTGTGTGTGTGTGTGTGGCACTCCTATTCAAAAGCTCGCCCGAGGTAATGTATTTGTATGGAGCTATGAAGTTGATATTGAGTAGAGAACCTGTAATGAGTTCCAGATTGATGATATGA 3024 44.74 MEAGYGGEACQLYGMSSMDLRAAVGKRSLEWNLNDWKWDGDLFIATPLNTVESDHLNRQLFPIVSGIPLTTGGSSNSSSSCSDEANMGIEKGKREVEKRRRINGIEDENLNDEARSLSLKIGGNVSQIVERDAGSWEGSSGKKSKLGGGASNRAVCQVEDCGADLSNEKEYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLLRILANFHSNGSNQTTDQDLLSHLIRTLACQSSEHGGKNLTGILHEPQKLLNNGALIGKSDLVSTFLSNGPPVPLRSSKQHDTIPISEAPVQAIGRGGDTPAVSCIKPSTSNSPPAYSEIRDSQVGQCKMMNFDLNDAYVDSDDGMEDIERQALPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTVYTRQTEAAWDDLCHDLSTSFNSLLDVSDDAFWRTGWVYVRVQHQIAFVYQGRVVVDTSLPLRNKNYCRITSVNPVAVSTSKKAIFSVKGRNLTQPTTRLLCAIEGKYLTQEASDEPTERDDNLNAQDDSRCVTFSCSIPVVYGRGFIEVEDDGFSSSFFPFIVAEEDICSEICTLQSALELTETCSNSGETEELEGRSNAMEFIHEIGWLFHRNQLKSRLGDLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLLDGTVDAGGHSSLNLALMDMSLLHRAVRKNSRSLVELLLVYPSKVKDTSRADSFLFRPNVVGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAEHVVVEIPPSSVSDGRWNEKQNTDMSSSRFEIGRTEVKHCRQCVRKPVRCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVMYLYGAMKLILSREPVMSSRLMI 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4968536 4974850 - CmaCh14G009580.1 Cma14g00958 307941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g00958 1007 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Cma14g00958 1007 SUPERFAMILY Ankyrin repeat 781 886 IPR036770 -
Cma14g00958 1007 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Cma14g00958 1007 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Cma14g00958 1007 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 992 - -
Cma14g00958 1007 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 992 IPR044817 GO:0003677
Cma14g00958 1007 MobiDBLite consensus disorder prediction 420 455 - -
Cma14g00958 1007 Pfam SBP domain 156 229 IPR004333 GO:0003677
Cma14g00958 1007 Gene3D - 739 893 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g00958 - - - csv:101203103 1748.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g00262 Cma14g00958 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02053 Cma-Chr1:13036777 Cma14g00958 Cma-Chr14:4968536 1.04E-67 dispersed
Cma08g00864 Cma-Chr8:5324132 Cma14g00958 Cma-Chr14:4968536 6.11E-34 dispersed
Cma09g00010 Cma-Chr9:66151 Cma14g00958 Cma-Chr14:4968536 7.96E-36 dispersed
Cma11g01915 Cma-Chr11:12656696 Cma14g00958 Cma-Chr14:4968536 6.12E-36 dispersed
Cma13g00633 Cma-Chr13:6048123 Cma14g00958 Cma-Chr14:4968536 4.88E-35 dispersed
Cma14g00958 Cma-Chr14:4968536 Cma18g00310 Cma-Chr18:1655316 2.09E-31 dispersed
Cma01g00262 Cma-Chr1:1239826 Cma14g00958 Cma-Chr14:4968536 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g464 . . . . Bpe03g00509 . Bma13g00108 . . . Cma01g00262 Cma14g00958 Car01g00236 Car14g00872 . . Cpe03g00825 . . . . . . . . . . . . . . Cone17ag0385 Cone20ag1033 . Cone11ag0721 . . Chy04g01191 . Blo07g00617 Blo10g00099 Bda05g00421 . . Bpe11g00121 . . . Cmo01g00273 Cmo14g00981 . . . . Cpe02g01546 . . . . . . . . Cla10g01123 Cam10g1498 Cec10g1187 Cco10g1169 Clacu10g1180 Cmu10g1953 Cre10g1335 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma14g00958 CST 181 992 SBP-box Gene Family AT2G47070 54.9 1.0e-229 793.9
Cma01g00262 CST 179 1011 SBP-box Gene Family AT2G47070 52.5 2.3e-221 766.1
Cma14g00958 CST 25 992 SBP-box Gene Family AT3G60030 53.7 2.2e-266 916.0
Cma01g00262 CST 25 1011 SBP-box Gene Family AT3G60030 53.2 3.3e-262 902.1
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50570 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50570 60.8 9.7e-37 151.8
Cma13g01059 . 135 293 SBP-box Gene Family AT1G69170 52.2 6.2e-40 162.5
Cma14g00958 CST 181 992 SBP-box Gene Family AT2G47070 54.9 1.0e-229 793.9
Cma01g00262 CST 179 1011 SBP-box Gene Family AT2G47070 52.5 2.3e-221 766.1
Cma13g01059 . 135 293 SBP-box Gene Family AT1G69170 52.2 6.2e-40 162.5
Cma14g00958 CST 25 992 SBP-box Gene Family AT3G60030 53.7 2.2e-266 916.0
Cma01g00262 CST 25 1011 SBP-box Gene Family AT3G60030 53.2 3.3e-262 902.1
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50570 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50570 60.8 9.7e-37 151.8
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50670 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50670 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50670 60.8 9.7e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36257 PF03110 SBP 1.80E-29 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g00958 Cma_Chr14 FPKM 37.783897 41.702412 54.874702 58.338287 40.624424 43.152275 40.218468 37.785419 37.152508 37.417175