Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01003 ATGTGTGGTGGTCCAGAAAAATCCAATTCTGCATCTACTACTTCGGCCAGATTACCTAACCCCAAAGACATGAATCATTTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCTTCTGACAACGATGCAGAAGGCCTCAAGAGTATGATGGAGTCTGATTTGTTCTCTCTTAACAAGTCTGGACTCTGGTATGTTCGTCAAAAAGGTTCAAAACAAGTTGTTAATGAGCACAGAACACCCCTTATGGTTGCTGCCACATATGGTTGTGTTGATGTTCTGAAGCTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCATCTGGCACAGACAAGAGCACTGCTCTCCACTGTGCTACTTCCAGTGGTTCTGTGAATGCTGTTGATATTGTCGATTTGCTATTATCTGCTGGTGCTGACCCGAAAACCAAGGATGTTAATGGTGACCGCCCTGTGGATGTCATTTTCGTTCACCCGAAATTGCAGAAGCAGAACACAAGGTTCAGGCTAGAGGAGCTTCTCAATAATCATTCAAGTGGATCTTTGGACGTGTCCTGTTTACATTTGTCACTCAAAATGCCTGATTCAGAGTCACCACCACTTTCCTCTTCGTTGGAGGATGAGTTTCGATCTACACCCAAGTCTATTTCTTCTCCCAAATTTACTGATGGGTTTGCGAACTCTACAAAGGAGAAAAAAGAATATCCAATTGACCCATCACTTCCTGACATCAAGAACAGCATATATGCAACTGATGAGTTTCGTATGTTCTCTTTCAAGGTGAGACCTTGTTCTCGGGCGTATTCTCATGATTGGACCGAATGTCCTTTTGTCCACCCAGGGGAGAATGCCCGCAGAAGAGACCCAAGGAAGTTTCACTACAGCTGTGTTCCTTGCCCTGACTTTAGAAAGGGGGCTTGCAGGCATGGGGATATGTGTGAATATGCACACGGAGTATTCGAGTGTTGGCTTCACCCAGCACAATATCGAACCCGCCTTTGCAAGGATGGCACCAGTTGCAATAGGAGGGTCTGCTTCTTTGCTCACACTAACGAAGAACTAAGGCCATTGTATGTGTCCACTGGATCTGCTGTCCCGTCCCCACGATCAATTGGATCTGCTCCAACTGTAATGGATATGGCTACTGCATTGGGTCTTCTGCCTGGTTCCCCTTCATCAGTGTCAGCTTTATCTCCATCTCCATTTACTCAGGCCATGTCTCCCTCTTCCAATGGTGTGTGTCACTCTTCTGTGAACTGGCAGCAACCAAATGTACCGACTCTTCATTTACCAGGAAGTAACCTTCAATCCAGCCGATTGAGGTCGTCTCTGAATGCCAGGGATATGCCTCTGGAAGATTTGAACGTCTTGCCTGACTTCAACAGCCAGCCACGGATTTTGAATGATTTGAACTGTTTCTCTCAGCCTTGTCCGACTCCTGTGTCTGTGAGCCGATCTGGCTGGACCCAAACTCTAACTCCTAACAATCTTGAAGAATTATTTTCTTCTGAGATCTCTTCGTCTCCTAGATTCTCCGATCCAGCTGCCAATGTCTTTTCCCCTACGCGCAAATCAACAATGCTAAACCAATTCCAGCAGCAGCAGCAGCAGAACATGTCATCACCCATTAATACAAGCATTATGTCCCCTAAGAATGTTGATCATCATTTGTTGCAGGCCTCTTATGGAGTTTCATCCCCGGGAAGGATGTCGCCAAGAAACTCCGAGCCACATTCCCCTATGGGATCTAGGTTCTCCGCCTTCGTACAGCGTGAAAAGCAACATCTGCGCACTCTCAGTTCAAGGGAGCTTGGATCTAATGTCCCAAGCTCATTGATCGGATCTCCTATCAATTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTGGATTGGTCGGTTGGTAAGAATGAACTGGGTCAACAACTGCGAAGGTCATCTTCTTTTGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAAACCCTTGTGAAGGAATCCCCACCTGAGATGCTTAAAGAGAAGCTGGCAGTGCCTGGGAGGGGCGGTGCAGCATCCGGTGAGGGTCTAACTACTACTAAACCACAATTAGAATCCACTGATCATTCTGTGATTGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG 2181 46.17 MCGGPEKSNSASTTSARLPNPKDMNHLTVDCEDSFYSLLELASDNDAEGLKSMMESDLFSLNKSGLWYVRQKGSKQVVNEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSSGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPKTKDVNGDRPVDVIFVHPKLQKQNTRFRLEELLNNHSSGSLDVSCLHLSLKMPDSESPPLSSSLEDEFRSTPKSISSPKFTDGFANSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRHGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQAMSPSSNGVCHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFNSQPRILNDLNCFSQPCPTPVSVSRSGWTQTLTPNNLEELFSSEISSSPRFSDPAANVFSPTRKSTMLNQFQQQQQQNMSSPINTSIMSPKNVDHHLLQASYGVSSPGRMSPRNSEPHSPMGSRFSAFVQREKQHLRTLSSRELGSNVPSSLIGSPINSLPKWGSPNGKVDWSVGKNELGQQLRRSSSFEMGNNGEEPDLSWVQTLVKESPPEMLKEKLAVPGRGGAASGEGLTTTKPQLESTDHSVIGAWLEQMQLDQLVV 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5270069 5272249 + CmaCh14G010030.1 Cma14g01003 307986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01003 726 Gene3D - 33 181 IPR036770 -
Cma14g01003 726 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
Cma14g01003 726 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 19 724 - -
Cma14g01003 726 SUPERFAMILY Ankyrin repeat 79 159 IPR036770 -
Cma14g01003 726 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 322 IPR000571 GO:0046872
Cma14g01003 726 Pfam Ankyrin repeats (3 copies) 80 149 IPR002110 GO:0005515
Cma14g01003 726 Gene3D - 297 360 - -
Cma14g01003 726 MobiDBLite consensus disorder prediction 1 23 - -
Cma14g01003 726 SMART ANK_2a 80 110 IPR002110 GO:0005515
Cma14g01003 726 SMART ANK_2a 115 147 IPR002110 GO:0005515
Cma14g01003 726 PANTHER UNKEMPT FAMILY MEMBER 19 724 IPR045234 -
Cma14g01003 726 MobiDBLite consensus disorder prediction 1 21 - -
Cma14g01003 726 ProSiteProfiles Ankyrin repeat region circular profile. 115 149 - -
Cma14g01003 726 ProSiteProfiles Ankyrin repeat profile. 115 150 IPR002110 GO:0005515
Cma14g01003 726 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Cma14g01003 726 SMART c3hfinal6 297 323 IPR000571 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00227 Cma14g01003 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00074 Cma-Chr6:416221 Cma14g01003 Cma-Chr14:5270069 0 dispersed
Cma14g00450 Cma-Chr14:2142180 Cma14g01003 Cma-Chr14:5270069 0 dispersed
Cma14g01003 Cma-Chr14:5270069 Cma20g00342 Cma-Chr20:1682067 2.24E-144 dispersed
Cma01g00227 Cma-Chr1:1049928 Cma14g01003 Cma-Chr14:5270069 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36258 PF12796 Ank_2 5.40E-10 CL0465 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01003 - - cpep:111790396 1390.56