Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01006 ATGCGGAAGAAGCGTCGAGTTCCAGAGGTTCTATGGCGGCTCTTCCGCCACCGCGCACGCACGCTTGCTGAAACCATCACGTCATTACTTCCACCGGCCGATTGCCGCTGCGAGAGGCGGCGATGTCTGCACTGCAGCGGTGCTGCGCCGGAGGGTTTCCTCCTCAGACCAGGTGATCCTCGCGCTTATCGAGACCTTCTGACTCAGTGTTACGTTGTTGTCTCTGAGAAGGCGTCTCCGCGCTCTGATTTTTCAAATGAATCGCACTGGTCTCTGCATGAGATTGTGGTGAGGACTATAGAAATCATAATCAGTACACAACGGGTTGATAGCAATTTAATTTGCAGTGGTTTTGATAAGTTCACCCGGTCAAGTCCAGTTGTTGATCTTTTAACTTGTCCGGCCTGGGATCTTCTCTTAAGCCGGGTTAGGGATGATATGATGGTCTATCTGCTAATGCATACTTCAATATTCTTGCCCCAACCAAAGAAGAGGCATTATCAGGTGGCAGGTCTTCCCATCAATAATTTATGCATTAAGTTGTCAGAATATTCAGCTGTTTCCCCAAATCAAAGTAATTTATTTGGTAAACATGGACTGCAGAAGAGGAAAAGAGATGGTGATCAACCTTGTGGTTCCTTCATTGATACTTGTCCTCCCTTTCACACCGAATATTTTTCTGGGTGCAAAAGTAGTTATTGCCAATCATCATGCTGGGATCAAGAGGACAAACAGTTCCAATTGGGTTCATTGAACATAATTAGTCAATCGATCAGTATTCCTACTCCCACTCTTGAAAATAATTCAGATAGGAAATCAGAAAAGTCGAGCACGTCTGTTACAAAACTCGGAAAGCGTTCAAGGCCATTTAGATGGCAACGGGAAAGAAAGCGTAGGCTATTAGATCCTGGCAATAGTTGGGGGTTGACCCCTTGCACGTCAACGTATTCTGATAAGAATACCTTACATGAGAAGCCTCCAAATCAGTTTAGTGCACACTCATGCCATTCCCACAAGCAATCTCGAAAGAATATTGAAGAGGTTTACATCAACAGGAAATCCATGTTTTACAATCTGGATTGTCCTTCAGCAATTCTTCTGAAAGGAAGTATCCTATTTTTAGATATACTTCGTTCCTTGAAGCCAAACTTTGCTGGTTCAGATAGTCTTGCTAGATATATCTTTGGTTCATATGATACAAATGGAAATGCGCCTTCCTCATTACTCATCTGCAACGATGGCACCTGTCCATTTGGATCAAAATGCCTATATCATTCACTTACCAAATTGCTCAAAGTTCTGATTCGTAGAAGCCGTAATTGTCAGTATGTTAGATTATTGGATAAGCACTGTGGTGCCCCGTCGTTAGACCAAATATCCATTGGAAATTCAGGCTCCATCTTTGAGTGTCATGGAAGTGAGTTGAATAGAGATATTGGTGAAGGCACCCGTGGTTCTGATGTCAAACATAGCAAGAATTATCTAGAAGCAATCGATCCTCAATTTGCGGCCAAGTTCTATTGCCCCAAAAATCAGGTGGTCTCATTCATATGGGCGGTTTGTCGGAGTATAGTTCCTGCAGATATGCTGGGAACCTGTTCTAATTGGAGAATATTGAGGAGAAATATTTCCAAGTTTATAAAATTAAGAAGATTTGAAAACTTTTCCCTGAAGCAAGCTATGCATAAATTGAAAATCTCATGGTTTCCATTTTTATCAGATAAACATTCTTTATGTTGCCAGAATGGTAAGGTGCCAAACTCTGTGGAGCTGAGGAGGGTTATGCACGAAGGATTCAGCATGTCAAAGGAAGCAGCATACATGATGAAACACAATCTTACGGAAAGTTGGATTTATTGGTTATTTTCACACTTAATTGTACCATTGATCCAAGCACACTTCTACGTTACTGAAACTGAATTTGGGAAACAAGATGTTTATTTTTTCCGGAAGTCAATATGGGAGAAGTTAACAAAGGGCGCTACCACTAGCTTTAAGGATAAAGGTTATTGTAACTTGAATGACTCAGCTGTCAGAAATATTCTTGCAAATAGATCATTTGGTTTCTCAAAACTTAGGCTTTGCCCAAAAGAAAATGGAGTAAGGATTCTGGCAAATCTCAAGGCATGTTCAAGAATGCCAACAGAAGAGTTCTATTTCAAAGATGGTCAATCTTGTGGAGTGCATGGAAAGAAAAAGCGAATCAAGTTTGATTACTACAAGTCTGTGAACAATGTTCTTAGAGATACCCACGCTGTTCTGAAAGGTATTAAGTTGAAAGAACCAGAGCTTTTGGGATCGTCGGTATTTGATTACAATGATGTCTATAAAAAGTTACGTATACTTTTACTTGGACTGGAGAAGGCTAAGGCTTCCATGCCTGGCTTATTCCTTGTTGTTTCTGATGTATCAAATGCATTTGATTCTATTGATCAAGATAAGCTGCTTGATGTGATGAAAAACATTATTGTGAAAGATGAGTATCATCTTAAACAATACCATTACGTTTTATGCACAAAGAAGACTTTGTGGGTTCATGAGAATGTAATGTTGGTTGATCCAAATATGAGCCCAAGATTTTCTCCTCCACAGTTTCATTCCTTGCATAGCGTCCTTGTTAATCAGGATCTGTGTAGCTTTTTAAACAAGGAAAAGCTCTTTTATACCCTACGTGAGCACGTGAAGCGAAATGTTATGCAATTTGATAAAAAGTTTTACTTACAAAGAACAGGTATTCCTCAAGGAAGTGTTTTATCATCTTTGCTCTGCTCATTATACTTCGGAGATCTCGAGAGGAAGGTGATTTTTCCATTTCTTGGGAGAGTTGTTGAATCTAAGGTTGACAATCCATCTGTGAGACAAAATTGTCTTGACCCTTCTATTTCCCTGAGTAGCAAGGAGGATGAAATGATAACAAATCCTAGTTATTTGCTGCTTAGATTTATTGATGATTTCCTTTTCATATCAACCTCGAAGCATCTGGCAGCAAATTTCTTATTCAGACTTCACAGAGGATTCCGGGAATATAATTGCTACATGAATGAAAGTAAGTTTGGTCTGAACTTTGATGTGGGAAATACATCAGGACTCGTCTCCAAAAGAGTCTATGTTGGTAAAGATGGCATTTCATTTCTTCGATGGAGTGGTTTGCTCATCAACTGTCAGTCTCTCGAAATTCAGGCAGACTACACAAAGTATTTGAATAACCACTTAAATTCAACCCTAACTGTTTGCTGGAAAGGCAAACCTGGACATCATCTGAAGGCAAAGCTGTGTGACTATTTAAGGCCCAAATGCCATCCGATCTTCTTTGATTTGAATATCAATACTGCTGCAGTTGTCAGATTAAACATTTTTCAAGCATTTCTTTTATGTGCCATGAAGTTCCATTGCTACATATGCCATTTGTCATATATGTGCAAATTCAGCAGAAAATTTCTTTTGAACATCATTCTAAGATCTCTAAGGTACATGGATGTGCTCGTAAAGAATAGGATGTCTTCTATTCAGCTCGATTTGCTTCCACGTCCAAGATTGCAGTTAGAGGATGGAGAAGTTGAATGGCTAGGACTAAATGCTTATGTTCAAGCATTGACAAGGAAACAGGCACGACATGCTCGGTTACTGTCATTGTTGAAGTCGAGGTTAGTTGCTCATCAGTTGTCGGGGTGCATCTCTTCGGATCTGATCTATGCAGTTGATCCCTCACATTCCTCCTTACTCTGGAAAATCAAGCCGAACCTTGTGTTTGAGAAATTAGGGTTTCTTTGTAGAGAAATGGCGTTGGCTAGTCGCATGAGATCCACCATCCCTGTTCTCAGCAATTTTTTGAGGTCCGAATCGTCCTGCACTCCGCTCTCAAGGACTTATGCCGCTACATCAGGGAAAAGTGAAGCAAAAGTGAAGGTTCCTATTGCATTGTTTGGAGGGTCTGGAAACTATGCCTCTGCTCTGTATATAGCTGCAGTAAAAGCTAATTCTTTAGACAACGTGGAGTCTGAGCTTGTTAACTTTGTCGAGGCTATTAAGAAAAGCCCAACATTTTCTCAGTTCACAATGGACCTGTCAGTTCCAGCTGAAACTAGAGTTAAGGCTATCACTGAAATTTCTGCGGAAGCTAAATTTTCGGATGTCGTAAAGAACTTTTTAGTTGTGCTGGCTGAGAATGGGAGGCTGAGATATGTAGATAGTATAGCAAAGAGATTTTTGGAGTTGACTATGGCTCATAGGGGAGAAGTTAAAGCATTTGTTACTACTGTTATTCCCATTCCACCACAAGAAGAGAAAGAATTGACGGAGACGTTGCAAGATATAATTGGACAGGGAAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAGGTATTTGACATGTCCATTAAAACCCGGGCACGTCAAATGGAGAGGTTCTTGTGTCAACCTGTAACTTTTGATGGACTCTGA 4479 40.54 MRKKRRVPEVLWRLFRHRARTLAETITSLLPPADCRCERRRCLHCSGAAPEGFLLRPGDPRAYRDLLTQCYVVVSEKASPRSDFSNESHWSLHEIVVRTIEIIISTQRVDSNLICSGFDKFTRSSPVVDLLTCPAWDLLLSRVRDDMMVYLLMHTSIFLPQPKKRHYQVAGLPINNLCIKLSEYSAVSPNQSNLFGKHGLQKRKRDGDQPCGSFIDTCPPFHTEYFSGCKSSYCQSSCWDQEDKQFQLGSLNIISQSISIPTPTLENNSDRKSEKSSTSVTKLGKRSRPFRWQRERKRRLLDPGNSWGLTPCTSTYSDKNTLHEKPPNQFSAHSCHSHKQSRKNIEEVYINRKSMFYNLDCPSAILLKGSILFLDILRSLKPNFAGSDSLARYIFGSYDTNGNAPSSLLICNDGTCPFGSKCLYHSLTKLLKVLIRRSRNCQYVRLLDKHCGAPSLDQISIGNSGSIFECHGSELNRDIGEGTRGSDVKHSKNYLEAIDPQFAAKFYCPKNQVVSFIWAVCRSIVPADMLGTCSNWRILRRNISKFIKLRRFENFSLKQAMHKLKISWFPFLSDKHSLCCQNGKVPNSVELRRVMHEGFSMSKEAAYMMKHNLTESWIYWLFSHLIVPLIQAHFYVTETEFGKQDVYFFRKSIWEKLTKGATTSFKDKGYCNLNDSAVRNILANRSFGFSKLRLCPKENGVRILANLKACSRMPTEEFYFKDGQSCGVHGKKKRIKFDYYKSVNNVLRDTHAVLKGIKLKEPELLGSSVFDYNDVYKKLRILLLGLEKAKASMPGLFLVVSDVSNAFDSIDQDKLLDVMKNIIVKDEYHLKQYHYVLCTKKTLWVHENVMLVDPNMSPRFSPPQFHSLHSVLVNQDLCSFLNKEKLFYTLREHVKRNVMQFDKKFYLQRTGIPQGSVLSSLLCSLYFGDLERKVIFPFLGRVVESKVDNPSVRQNCLDPSISLSSKEDEMITNPSYLLLRFIDDFLFISTSKHLAANFLFRLHRGFREYNCYMNESKFGLNFDVGNTSGLVSKRVYVGKDGISFLRWSGLLINCQSLEIQADYTKYLNNHLNSTLTVCWKGKPGHHLKAKLCDYLRPKCHPIFFDLNINTAAVVRLNIFQAFLLCAMKFHCYICHLSYMCKFSRKFLLNIILRSLRYMDVLVKNRMSSIQLDLLPRPRLQLEDGEVEWLGLNAYVQALTRKQARHARLLSLLKSRLVAHQLSGCISSDLIYAVDPSHSSLLWKIKPNLVFEKLGFLCREMALASRMRSTIPVLSNFLRSESSCTPLSRTYAATSGKSEAKVKVPIALFGGSGNYASALYIAAVKANSLDNVESELVNFVEAIKKSPTFSQFTMDLSVPAETRVKAITEISAEAKFSDVVKNFLVVLAENGRLRYVDSIAKRFLELTMAHRGEVKAFVTTVIPIPPQEEKELTETLQDIIGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLCQPVTFDGL 1492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5295228 5308428 - CmaCh14G010060.1 Cma14g01006 307989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01006 1492 SMART Telomerase_RBD_2 511 667 IPR021891 GO:0003964
Cma14g01006 1492 CDD TERT 901 1053 - -
Cma14g01006 1492 Hamap ATP synthase subunit delta [atpD]. 1306 1485 IPR000711 GO:0015986|GO:0046933
Cma14g01006 1492 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 1313 1482 IPR000711 GO:0015986|GO:0046933
Cma14g01006 1492 Gene3D - 969 1065 - -
Cma14g01006 1492 Pfam ATP synthase delta (OSCP) subunit 1312 1481 IPR000711 GO:0015986|GO:0046933
Cma14g01006 1492 Gene3D - 1071 1229 - -
Cma14g01006 1492 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 1445 1464 IPR020781 GO:0015986|GO:0016020|GO:0046933
Cma14g01006 1492 MobiDBLite consensus disorder prediction 261 288 - -
Cma14g01006 1492 Gene3D - 367 676 - -
Cma14g01006 1492 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 676 1052 IPR000477 -
Cma14g01006 1492 PANTHER TELOMERASE REVERSE TRANSCRIPTASE 3 1245 IPR003545 GO:0003677|GO:0003721
Cma14g01006 1492 PRINTS ATP synthase delta subunit signature 1391 1405 IPR000711 GO:0015986|GO:0046933
Cma14g01006 1492 PRINTS ATP synthase delta subunit signature 1380 1391 IPR000711 GO:0015986|GO:0046933
Cma14g01006 1492 PRINTS ATP synthase delta subunit signature 1310 1329 IPR000711 GO:0015986|GO:0046933
Cma14g01006 1492 PRINTS ATP synthase delta subunit signature 1458 1476 IPR000711 GO:0015986|GO:0046933
Cma14g01006 1492 PRINTS ATP synthase delta subunit signature 1443 1458 IPR000711 GO:0015986|GO:0046933
Cma14g01006 1492 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 1311 1412 IPR026015 -
Cma14g01006 1492 Pfam Telomerase ribonucleoprotein complex - RNA binding domain 512 663 IPR021891 GO:0003964
Cma14g01006 1492 Gene3D - 1311 1403 IPR026015 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00931 Cma-Chr1:5787559 Cma14g01006 Cma-Chr14:5295228 8.01E-15 dispersed
Cma09g01282 Cma-Chr9:8822951 Cma14g01006 Cma-Chr14:5295228 6.76E-15 dispersed
Cma01g00223 Cma-Chr1:1027840 Cma14g01006 Cma-Chr14:5295228 1.52E-138 wgd
Cma14g01006 Cma-Chr14:5295228 Cma17g00952 Cma-Chr17:7086849 1.65E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01006 K11126 - csv:101209644 1884.0