Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01056 ATGGCGGCTGGAGGGTCTAGTTCTGGGCAGCCACAGTTCATTGCGAGGGCTGGAAATGAGAGTTTTTCACACGCACCATTGATCGAGAATCCGGAAACTGGTCAGATTGTTGTTCCTGATAAGAAAAGCTGGAAGAACCTTTTTGCATATATGGGCCCGGGATTTCTTGTATCCATTGCATATATTGATCCTGGGAATTTTGAAACTGACCTTCAATCTGGAGCTCAGTACAAGTATGGGTTGCTTTGGATCATATTAGTGGCATCCTGTGCTGCCCTCATTATTCAATCCTTAGCAGCAAATCTAGGGGTTGTCACAGGAAAACATTTAGCAGAGCACTGTAAAGCTGAGTACCCCAAAGTGCAAAATTTCATCCTATGGGTTCTTGCTGAGATTGCAATTGTTGCATGTGATATTCCTGAAGTTATAGGAACCGCTTTTGCATTGAATATGCTCTTCAGCATTCCTGTATGGTGTGGTGTTCTTCTAACAGGGCTTAGCACACTCTTCCTTCTTGCACTGCAGCAATATGGGATTAGAAAGCTTGAATTCTTGATTGCCTTTCTTGTACTGACCATTGCGATTTGCTTCTTCCTGGAGCTGGGCTATGCAAAGCCTGATGTTGGAGAAGTTTTTTATGGGTTATTTGTCCCTCAATTAAAAGGAAGTGGTGCTACTGGTCTTGCTATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTCTTTCTTCATTCGGCACTCGTGCTCTCTCGGAAAATACCCCGATCCGTTTCTGGCATCAAGTACACATTTTCGACACAGGAAGCTTGCAGATTTTATATGATCGAGAGTGGATTTGCTCTCATGGTGGCTTTTCTGATTAATGTATCAGTCATTTCAGTTAGTGGTGCAGTTTGCAATTCACCAGATCTAAATAAGGAGGACCAAATGAGCTGCAATGATTTGGACTTGAATAAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCAAAACTTTTTGCCATTGCTTTATTGGCATCTGGTCAGAGTTCTACCATAACAGGAACCTATGCAGGACAGTATGTTATGCAGGGGTTTCTCGATTTGAAACTGACGCCATGGGTCCGAAACTTTTTAACCCGATGCTTAGCAATTGTTCCTAGTTTGATTGTTGCAATCATTGGTGGGTCTTCTGGGGCTGGGAAGCTCATCATTATTGCGTCTATGATTTTGTCATTTGAACTTCCTTTTGCTCTCGTTCCTCTTCTGAAGTTTACAAGCAGCAGGACCAAGATGGGAACACATGTCAACTCCACTGCGATTACGGTATTGACATGGATTATTGGGTTCCTCATCATGGCTATAAACATATACTACCTCATGACCCGCTTCATCCACGTTCTCCTTCATAACGATCTCCAACTCGTAGCAGTCGTCTTCATAGGGATACTTGGATTTTCAGGGATGGCAATATATTTAGCAGGAATAGCTTATCTGGTTTTCAGAAAGACCAAGGAGAGCACTCATCTGTTGGCACTAACAACAGAAGAAAGCCAACAACTGAGCAACACACCGAGTAAGAGATCAGGATATGGTCTCCCAAATGAAGATTTAACAAGTAGAACTACAAGTGATGATGTAAACTGA 1638 42.31 MAAGGSSSGQPQFIARAGNESFSHAPLIENPETGQIVVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYGLLWIILVASCAALIIQSLAANLGVVTGKHLAEHCKAEYPKVQNFILWVLAEIAIVACDIPEVIGTAFALNMLFSIPVWCGVLLTGLSTLFLLALQQYGIRKLEFLIAFLVLTIAICFFLELGYAKPDVGEVFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVSGIKYTFSTQEACRFYMIESGFALMVAFLINVSVISVSGAVCNSPDLNKEDQMSCNDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLTPWVRNFLTRCLAIVPSLIVAIIGGSSGAGKLIIIASMILSFELPFALVPLLKFTSSRTKMGTHVNSTAITVLTWIIGFLIMAINIYYLMTRFIHVLLHNDLQLVAVVFIGILGFSGMAIYLAGIAYLVFRKTKESTHLLALTTEESQQLSNTPSKRSGYGLPNEDLTSRTTSDDVN 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5585112 5590310 + CmaCh14G010560.1 Cma14g01056 308039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01056 545 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma14g01056 545 Hamap Divalent metal cation transporter MntH [mntH]. 32 461 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma14g01056 545 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 514 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma14g01056 545 MobiDBLite consensus disorder prediction 517 545 - -
Cma14g01056 545 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma14g01056 545 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma14g01056 545 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma14g01056 545 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma14g01056 545 PRINTS Natural resistance-associated macrophage protein signature 405 424 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma14g01056 545 PRINTS Natural resistance-associated macrophage protein signature 345 364 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma14g01056 545 PRINTS Natural resistance-associated macrophage protein signature 373 390 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma14g01056 545 PANTHER METAL TRANSPORTER NRAMP1 8 514 - -
Cma14g01056 545 Pfam Natural resistance-associated macrophage protein 67 435 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00504 Cma-Chr2:2694430 Cma14g01056 Cma-Chr14:5585112 2.20E-110 dispersed
Cma03g01232 Cma-Chr3:8147022 Cma14g01056 Cma-Chr14:5585112 1.37E-35 dispersed
Cma07g00921 Cma-Chr7:4391088 Cma14g01056 Cma-Chr14:5585112 1.42E-31 dispersed
Cma14g01056 Cma-Chr14:5585112 Cma20g00979 Cma-Chr20:5105933 4.24E-104 dispersed
Cma04g02382 Cma-Chr4:16477866 Cma14g01056 Cma-Chr14:5585112 0 transposed
Cma01g00184 Cma-Chr1:808703 Cma14g01056 Cma-Chr14:5585112 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01056 K21398 - csv:101209649 944.495