Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma14g01058 | ATGTCGATTGATACCTCTGCAGTTTCCGGCCAAATTGTGTGTGTCACCGGCGCTGGAGGCTTCATTGCTTCTTGGCTTGTAAAGCTTCTTTTGGAAAAGGGCTACACCGTTCGAGGAACTGTTCGAAACCCAAATGATCAAAAGAATGCTCATTTGAAGCACTTGGATGGAGCTAATGAGCGTCTGTCTCTGTTTAGAGCTGATCTTCTCGATTTTGAAAGCCTCAAAGCAGCTATTATGGGCTGTGATGGTGTTTTCCACACTGCCTCTCCAATGACCGATGATCCCGAAAAGATGGAAGAAGCCATAATTGGGAGTAAGAATGTCATGACCGCCGCCGCAAAAGCAAAAGTTCGACGAGTGGTGTTCACATCATCCATCGGCGCCGTCTACATGAATCCTAACCGAAGCCCCGACACGGTGGTGGATGAGTCTTGTTGGAGTGACCTTGACTTTTGCAAGAACACCAAGAATTGGTATTGCTATGCCAAGACAGTAGCAGAGCAGGCAGCATGGGCAGTGGCAGAAGAAAAAGGAGTGGATTTAGTAGTGGTGAACCCAATGTTGGTATTGGGGCCTCTATTGCAAGAGGCTGTGAATACGAGTGTGGTTCATATAATGAAGTATTTGACAGGGTCAGCCAAGACATATGTAAACGCAGTTCAAGGATATGTTGATGTTAGGGATGTGGCGAAAGCCCATGTCTTGGTTTATGAAGCTCCTTCAGCTTCCGGCAGATATATATGTGTTGAGAGTATGCTTCACCGTGGAGAATTGGTTGATATTCTTGCAGAGTATTTTCCAGAGTATCCCCTCCCAACCAAGTGCTCTGATGAGGTGAATCCCAGGAAGAAGCCTTATAAATACAGTGTTGAGAAGCTGAAGTCATTGGGAGTGGAGTTCATACCAATCAAACAATGCATATATGAAACTGTGAGGAGCTTGCAACAAAAGGGGCATCTTCCACTTCCCTCCAAACTTCAACAATGA | 990 | 45.76 | MSIDTSAVSGQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPNDQKNAHLKHLDGANERLSLFRADLLDFESLKAAIMGCDGVFHTASPMTDDPEKMEEAIIGSKNVMTAAAKAKVRRVVFTSSIGAVYMNPNRSPDTVVDESCWSDLDFCKNTKNWYCYAKTVAEQAAWAVAEEKGVDLVVVNPMLVLGPLLQEAVNTSVVHIMKYLTGSAKTYVNAVQGYVDVRDVAKAHVLVYEAPSASGRYICVESMLHRGELVDILAEYFPEYPLPTKCSDEVNPRKKPYKYSVEKLKSLGVEFIPIKQCIYETVRSLQQKGHLPLPSKLQQ | 329 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 5639941 | 5641501 | + | CmaCh14G010580.1 | Cma14g01058 | 308041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma14g01058 | 329 | Gene3D | - | 3 | 329 | - | - | |
| Cma14g01058 | 329 | PANTHER | CINNAMOYL-COA REDUCTASE | 8 | 324 | - | - | |
| Cma14g01058 | 329 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 7 | 315 | IPR036291 | - | |
| Cma14g01058 | 329 | CDD | FR_SDR_e | 13 | 299 | - | - | |
| Cma14g01058 | 329 | Pfam | NAD dependent epimerase/dehydratase family | 13 | 243 | IPR001509 | - | |
| Cma14g01058 | 329 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 8 | 324 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma02g01256 | Cma-Chr2:7373999 | Cma14g01058 | Cma-Chr14:5639941 | 2.47E-108 | dispersed | |
| Cma13g00044 | Cma-Chr13:430330 | Cma14g01058 | Cma-Chr14:5639941 | 7.45E-93 | dispersed | |
| Cma14g01058 | Cma-Chr14:5639941 | Cma17g00896 | Cma-Chr17:6791765 | 0 | dispersed | |
| Cma14g01057 | Cma-Chr14:5613286 | Cma14g01058 | Cma-Chr14:5639941 | 0 | tandem | |
| Cma14g01058 | Cma-Chr14:5639941 | Cma14g01059 | Cma-Chr14:5644557 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma14g01058 | K09753 | - | csv:116401668 | 580.096 |