Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01060 ATGGCTGGGCCCACTCCCGATGGCAACTCCGGCAATCCGCCTTCCACGCCTGATTCTCCCACCACCTCCGCCGGTTTCGAAACGGACCAGCTCCCTCATCTCAGCCAAACTTCCGACATCTACCCCGATGAGGACGAAGCCGCTGTTGATCCTCATGTCCTTCCCGACGAGCCTGACCCCGATGAAGAGGAGGAAGGAGAGGATCTCTACCACGACAATTTCTTGGACGATTATCGGAGGATGGACGAGCATGACCAGTACGAGTCCTTGGACCTCGACGATTCATTAGAGGACGAGAGAGATTTGGATCAGATTATGGAGGACAGACGAGCTGCCGAGATAGAACTGGACACTCGCGATGCTCAGTTCACCCGTCGGAAGCTTCCTGAGCTATTACATGATCAAGACTCGGAGGATGACAATTACAGGCCTTCAAAAAGAGCAAGAGCTGATTTTCGGCCTCCAGCTGCAGCAAGAAGCTATGATGAAATTGATGGTATGCAGAGTTCTCCTGGTAGATCACAAAGGGAAAACTCACGAGATGACGTGCCCATTACAGATCATTCTGTTGATGACCAATATGAGGATGAAGACGATGATGAAAATGAGAATGAGATGTATCGTGTTCAAGGGCCACTTAGAGAACATGTTACCATGGATGCGGTTCGGCGCTTTATAGGGAAAAAGTTCAAGAAATTCTTGGAAACATATGTGAATCCAAAGAGTGGAAATGGTGAGCTTGAGTACATGCGACTGATAAATGAGATGGTGTTAGCCAATAGATGCAGTTTGGAGATTGATTACAAACAGTTTATCTTTGTCCATCCGAATATTGCAATCTGGTTGGCTGATGCACCCCAGCCCGTCTTAGAAGTTATGGAAGATGTTGCAAAGAAGGTTGTCTTTGACATACATCCAAATTACAAAAATATCCACCAAAAGATCTATGTTCGCATCAATAATTTACCAGTCTATGATCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGTATTGGGGGCGTAGTAACCCGACGCTCTGGTGTCTTCCCCCAGTTGCAGCAGGTGAAGTATGATTGTGGTAAATGTGGCACAATATTGGGACCATTTTTTCAGAATTCTTATTCAGAGGTCAAGGTTGGCTCTTGTCCTGAATGCCAGTCGAAAGGGCCATTCACAGTAAATGTCGAGCAGACTATATATAGGAATTACCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGGCGACTTCCTAGGTACAAGGAAGTCATACTATTGAATGATCTAATTGATTGTGCTCGTCCTGGGGAAGAAATTGAAGTCACAGGCATTTATACAAACAATTTTGACTTATCATTGAATACAAAGAACGGTTTTCCTGTATTTTCCACTGTTGTTGAAGCAAATTACATTACCAAGAAGCAAGATCTCTTTTCTGCTTACAAGCTTACCCAGGAAGACAAAGATGAGATTGAGAAGTTGTCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAGTCCATTGCACCATCAATCTATGGTCACGAGGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACACCGGCTACGAGGCGATATCAACGTACTTCTATTAGGTGATCCTGGCACTGCGAAATCTCAATTTCTCAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCAGCTGTAGGTCTAACAGCAGCAGTGCACAAGGACCCTGTCACAAGGGAGTGGACCCTTGAAGGAGGTGCCCTTGTATTAGCCGATAGAGGAATCTGTCTTATTGATGAGTTTGACAAAATGAATGATCAGGATAGGGTGAGTATCCATGAAGCAATGGAGCAACAAAGCATTAGCATATCAAAAGCTGGAATAGTCACTTCTCTTCAAGCCAGATGTTCTGTCATTGCTGCTGCCAATCCCATTGGAGGAAGGTACGACTCCTCAAAAACATTCACGCAAAATGTAGAGCTGACCGATCCTATTATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTGGACTCTGTAACAGACGAGATGCTTGCTAAGTTTGTGGTTGATAGTCATTTCAAGTCACAACCAAAGGGCGCCAATATTGATGACAAGTCTATAAATGAATCTCAGGAGGACAGTCAAGACTCTGCAGGGCCACTGGATTCGGAGGTGCTCCCCCAAGATCTGCTGAGGAAGTACATAACTTATTCTAAGTTGAATGTTTTTCCAAGGTTGCATGATGCTGATATGGATAAGTTAACACACGTCTATGCAGAATTACGAAGGGAATCTTCTCATGGGCAAGGAGTTCCTATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGACAGCACGTCACACAAGAAGATGTTGATATGGCAATTCGTGTGTTACTGGATTCTTTCATTTCAACCCAAAAATTTGGAGTGCAGAAAGCTCTGCAAAAGAGCTTCAGAAAGTACATGACTTTCAAGAAGGATTACAATGAACTGCTTCTATATCTTCTCCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTGTTCGCGGATCTACATCGGAGCTTACCCACATTAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAGGAACACGAAATTTATGATCTGAAACCCTTCTTCACCAGCTCTCATTTTTCAAATGCTAAGTTTGTGCTGGATGAAGAGCATGGTCTAATCAGGCATCATCTTGCCAGGTGA 2835 43.77 MAGPTPDGNSGNPPSTPDSPTTSAGFETDQLPHLSQTSDIYPDEDEAAVDPHVLPDEPDPDEEEEGEDLYHDNFLDDYRRMDEHDQYESLDLDDSLEDERDLDQIMEDRRAAEIELDTRDAQFTRRKLPELLHDQDSEDDNYRPSKRARADFRPPAAARSYDEIDGMQSSPGRSQRENSRDDVPITDHSVDDQYEDEDDDENENEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCGKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYITKKQDLFSAYKLTQEDKDEIEKLSKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDILCVVKDVVDSVTDEMLAKFVVDSHFKSQPKGANIDDKSINESQEDSQDSAGPLDSEVLPQDLLRKYITYSKLNVFPRLHDADMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELTHINVKLEDLQSKAQEHEIYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLAR 944
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
14 5671365 5677882 + CmaCh14G010600.1 Cma14g01060 308043
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01060 944 Pfam MCM OB domain 327 454 IPR033762 -
Cma14g01060 944 PANTHER DNA HELICASE 148 937 - -
Cma14g01060 944 CDD MCM2 510 837 - -
Cma14g01060 944 MobiDBLite consensus disorder prediction 723 748 - -
Cma14g01060 944 MobiDBLite consensus disorder prediction 8 37 - -
Cma14g01060 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 841 IPR027417 -
Cma14g01060 944 SUPERFAMILY Nucleic acid-binding proteins 229 476 IPR012340 -
Cma14g01060 944 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 148 937 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma14g01060 944 MobiDBLite consensus disorder prediction 113 158 - -
Cma14g01060 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 548 563 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma14g01060 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 608 622 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma14g01060 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 636 649 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma14g01060 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 660 672 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma14g01060 944 PRINTS Mini-chromosome maintenance (MCM) protein family signature 687 695 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma14g01060 944 MobiDBLite consensus disorder prediction 113 203 - -
Cma14g01060 944 Pfam MCM N-terminal domain 228 321 IPR027925 -
Cma14g01060 944 Pfam Mini-chromosome maintenance protein 2 44 199 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cma14g01060 944 Pfam MCM P-loop domain 495 717 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma14g01060 944 MobiDBLite consensus disorder prediction 175 190 - -
Cma14g01060 944 Gene3D - 328 453 IPR012340 -
Cma14g01060 944 Gene3D - 220 324 - -
Cma14g01060 944 Pfam MCM AAA-lid domain 754 838 IPR041562 -
Cma14g01060 944 Gene3D - 487 861 IPR027417 -
Cma14g01060 944 ProSitePatterns MCM family signature. 616 624 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cma14g01060 944 SMART mcm 324 839 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma14g01060 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 337 354 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cma14g01060 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 360 372 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cma14g01060 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 395 409 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cma14g01060 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 456 467 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cma14g01060 944 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 471 482 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cma14g01060 944 MobiDBLite consensus disorder prediction 1 68 - -
Cma14g01060 944 ProSiteProfiles MCM family domain profile. 507 713 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma14g01060 944 Gene3D - 355 405 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00352 Cma-Chr6:1638517 Cma14g01060 Cma-Chr14:5671365 4.97E-90 dispersed
Cma12g01169 Cma-Chr12:9219512 Cma14g01060 Cma-Chr14:5671365 4.09E-105 dispersed
Cma14g01060 Cma-Chr14:5671365 Cma19g00684 Cma-Chr19:7093951 4.89E-103 dispersed
Cma19g00466 Cma-Chr19:5576939 Cma14g01060 Cma-Chr14:5671365 1.45E-77 dispersed
Cma14g01060 Cma-Chr14:5671365 Cma06g01755 Cma-Chr6:10703085 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01060 K02540 - csv:101219546 1734.15