Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01087 ATGGGAACGATTTGGGCGGTTTCAATCGTGCAGACGCTGCTATTTTTGGCTTTCTTCCATTTGGCCGCTTCCTATACTGATTCCCGCGATGCTACAGTTCTTCGAGCTTTGAAAGATGATTGGCAAAATACACCACCAAGCTGGGGTGCATCAAATGATCCCTGTGGAGCCCCCTGGGAAGGAGTTATTTGCAACAATTCAAGAGTCGTTGCATTGAGATTATCGAGTATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTGAACTTAAATCATTGGACCTTTCAGCGAATGGAGGCCTCATTGGTTCGATCTCCCGGGCGCTTGGGAATTTGCTGAAATTGGATACCTTGAGCCTTTCTGCGTGTGGATTTAGTGGTACAATTCCGGAAGAACTAGGCAATCTTGCGGAGCTAACCTTCTTGTCTTTATATTCAAACAATTTCTCTGGAACCATACCGGCTACTCTAGGAAAACTCTCCAAACTCTACTGGCTAGACCTGGCAGATAATAAGTTGACTGGTGCTCTTCCAGTTTCCACTTCCGAATCTCCGGGTTTAGATCAACTTTCTGGGGCTAAACATTTTCATTTCAGCAAAAACAAGCTGTCAGGAGCCATTCCACCTGAACTTTTTAGCTCTGAGATGGAATTATTACACATATTATTTGACGGGAATAATTTTTCTGGGAGTATCCCACCAACATTAGGACTTGTTCAGTCCCTTGAGGTTCTTCGACTTGATCGAAATTCTTTAACAGGCAATGTCCCATCAACTCTGAGCAACCTAATTAATATCAATGCATTGCATTTGGCCAACAATAAGCTAACAGGTCTACTACCAAACTGTACTCAAATGAGTTCACTAAGTCACGTGGACCTTAGTAACAACTCATTTAACTCATCAGTAGCTCCGGAATGGTTCTCAACTCTACAATCTCTCACCACTCTTATTGTTGAATATGGGTCAATACGAGGAACTCTGCCAGAAGGAATCTTTATCTTACCACATATACAGCAAATAAAGCTGAAGAACAATGCATTTGGTGGGACATTAATTATGGGTGACAGCATCAGCCAATCGTTGCAGCAAGTTGATTTGCAAAATAACGATATTTCCTCAGTTACCTCTTTTTCGGGATATACTAACACATTGATGCTGTCGGGAAATCCTGTGTGTAAAACTAGTGTCCTCTCAAATACGAACTATTGCCACCTTCAACAGCAACAAACAAAACCATATTCTACGAGCCTTGTCAATTGTGGTAGTAAGTCATGTCCTCCTGATGAGAAGCTGAACCCTCAGAGTTGTGAATGTGCCTATCCATATGAAGGGACCTTATACTTTAAAGGATCCTCTTTCCGGGAATTGTCCAATATAACTCTATTTCACTCATTGGAAACGAGCCTTTTTAAAACTTTCAACAGCACGCCTTTTATTCAAAGCCCTTTCGTTAATATTGATGATTATCTTCAGATACAACTTGCACTTTTTTCATCCCACGATAAGTATTTCAGTAGGGAAGACATCCAGAAGATTGGGTTTGACTTGTACCATCATAATTTCCAGCCTCCCGATATGTTTGGGCCATACACTTTCAATGCATCTCCTTATCATTTTCCAGCCATCAATGGGGGATCAGCTTCAACGAACACCAGAATGGTAATTGGAATAGCTGTTGGCTGTGCCTTTCTTGTTCTATGCCTCATTGGAGTTGGAACATATGCAATTCAACAAAAGAGACGTGCAGAAAAGGCCCAGCCACATGGAAACGATAGTGGAGATGCGCCACAATTAAAGGGAGCCAGATGGTTTTCTTATGATGAACTTAAACAATGCACAAATAATTTCTCCACGAGTAACGTGATAGGATCCGGAGGATTTGGCATGGTATACAGAGGAACGCTGAAGGATGGAAAAGTGGTTGCAATCAAAAGAGCTCAACAAGGATCAATGCAGGGTGGCCTTGAGTTCAAGACAGAAATTGAGCTTCTTTCACGAGTTCATCATAAGAATCTTCTAGGCCTAGTGGGATTTTGTTCCGAACAAGGAGAACAGATTCTTGTTTATGAATTCATGCCTAATGGGACACTTAGAGAGAGCCTATCTGGAAAATCGGGTATTTATCTTGATTGGAAGAGAAGACTTCGTATCGCACTTGGGTCGGCCAGAGGCCTGACTTACTTACATGAGCTTGCTAATCCTCCCATAATCCATAGAGATATTAAGTCCACCAACATTTTACTAGATGAACGTTTAAATGCAAAGGTTGCAGATTTTGGCTTGTCCAAGCTCGTCTCAGACAGTGGAAAGGGACATGTTTCTACTCAAGTCAAAGGTACAATGGGTTATTTGGATCCTGAATATTACATGAGTGAACAATTGACTGAGAAAAGTGATGTATACAGCTTTGGAATAGTCATGTTGGAATTGATAACCGCTAAGCTGCCAATTGAGAAAGGAAAGCACATAGTTCGTGAGGTGCGTACGTTGATGAATAAGAGTGATGAAGAATATTATGGTTTGAAGGATATAATGGATAAATCCATCATCGTTAATACAACAAATCTTATTGGGTTCGGAAGGTTCTTAGAGTTGGGCATGCAATGTGTTGAAGAGGCAGCTGCAGAGCGTCCCACAATGAGTGATGTGGTTAAGGCAATTGAGAGCATTTTGCAGAATGATGGAATCAATACAAGCTCAACCTCAGCATCCTCATCAGCCACAGACTTTGGGGCTTCCAAAGTTGCTTCTAGACATCCTTATAATGATGCTATACTCAAAGAGGGTGTCATCAGCCAATGA 2814 41.72 MGTIWAVSIVQTLLFLAFFHLAASYTDSRDATVLRALKDDWQNTPPSWGASNDPCGAPWEGVICNNSRVVALRLSSMGLKGKLGGDIGGLTELKSLDLSANGGLIGSISRALGNLLKLDTLSLSACGFSGTIPEELGNLAELTFLSLYSNNFSGTIPATLGKLSKLYWLDLADNKLTGALPVSTSESPGLDQLSGAKHFHFSKNKLSGAIPPELFSSEMELLHILFDGNNFSGSIPPTLGLVQSLEVLRLDRNSLTGNVPSTLSNLININALHLANNKLTGLLPNCTQMSSLSHVDLSNNSFNSSVAPEWFSTLQSLTTLIVEYGSIRGTLPEGIFILPHIQQIKLKNNAFGGTLIMGDSISQSLQQVDLQNNDISSVTSFSGYTNTLMLSGNPVCKTSVLSNTNYCHLQQQQTKPYSTSLVNCGSKSCPPDEKLNPQSCECAYPYEGTLYFKGSSFRELSNITLFHSLETSLFKTFNSTPFIQSPFVNIDDYLQIQLALFSSHDKYFSREDIQKIGFDLYHHNFQPPDMFGPYTFNASPYHFPAINGGSASTNTRMVIGIAVGCAFLVLCLIGVGTYAIQQKRRAEKAQPHGNDSGDAPQLKGARWFSYDELKQCTNNFSTSNVIGSGGFGMVYRGTLKDGKVVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCSEQGEQILVYEFMPNGTLRESLSGKSGIYLDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDERLNAKVADFGLSKLVSDSGKGHVSTQVKGTMGYLDPEYYMSEQLTEKSDVYSFGIVMLELITAKLPIEKGKHIVREVRTLMNKSDEEYYGLKDIMDKSIIVNTTNLIGFGRFLELGMQCVEEAAAERPTMSDVVKAIESILQNDGINTSSTSASSSATDFGASKVASRHPYNDAILKEGVISQ 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7404971 7411453 - CmaCh14G010870.1 Cma14g01087 308070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01087 937 SUPERFAMILY L domain-like 286 408 - -
Cma14g01087 937 ProSiteProfiles Leucine-rich repeat profile. 364 385 IPR001611 GO:0005515
Cma14g01087 937 Pfam Protein tyrosine and serine/threonine kinase 622 889 IPR001245 GO:0004672|GO:0006468
Cma14g01087 937 SUPERFAMILY Protein kinase-like (PK-like) 606 903 IPR011009 -
Cma14g01087 937 ProSitePatterns Serine/Threonine protein kinases active-site signature. 740 752 IPR008271 GO:0004672|GO:0006468
Cma14g01087 937 Gene3D Transferase(Phosphotransferase) domain 1 696 920 - -
Cma14g01087 937 ProSiteProfiles Protein kinase domain profile. 620 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g01087 937 Gene3D Phosphorylase Kinase; domain 1 592 695 - -
Cma14g01087 937 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Cma14g01087 937 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 924 - -
Cma14g01087 937 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Cma14g01087 937 SMART serkin_6 620 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g01087 937 Gene3D Ribonuclease Inhibitor 28 186 IPR032675 -
Cma14g01087 937 CDD STKc_IRAK 626 894 - -
Cma14g01087 937 PANTHER LRR RECEPTOR-LIKE KINASE 9 924 - -
Cma14g01087 937 Gene3D Ribonuclease Inhibitor 187 286 IPR032675 -
Cma14g01087 937 SUPERFAMILY L domain-like 40 303 - -
Cma14g01087 937 Gene3D Ribonuclease Inhibitor 287 432 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00176 Cma-Chr6:881424 Cma14g01087 Cma-Chr14:7404971 0 dispersed
Cma14g01087 Cma-Chr14:7404971 Cma20g01007 Cma-Chr20:6446245 0 dispersed
Cma20g00368 Cma-Chr20:1774355 Cma14g01087 Cma-Chr14:7404971 3.02E-59 dispersed
Cma14g01087 Cma-Chr14:7404971 Cma14g00001 Cma-Chr14:353 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69076 PF07714 PK_Tyr_Ser-Thr 1.60E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01087 - - bhj:120091485 1483.0