Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01106 ATGAAGGGTTTCGGCAACAACGTTGTGTTCGATAGAGGAGGTGGCAGCGATGCGACTCAAGGTTTCGGAAGTGATGTGCTCGACAGAGACTTGGTGCAGAAATCTTTCAAAGGAACGGAGGAAAGTCTCGGGGACAATGATTCCTTTGAGATCCCTCGGGGTCAGCCTTCTAGAGGAGGAGACATTGAGCTTGGAACAAATGCTCCTACAAGTGCAGGAGATCTGGGCTTGGATGATTTCTTTAAAAAGGTCCAAGATATTGAAAAACAGAATGAGAAGCTGGACAGGTTATTGCGAAAGCTCCAGGATTCACACGAGGAGTCCAAAGCTGTGACTAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGAATGGAAAAGGATGTTGATGAAGTTGGAAAAGTTGCACGTTTTGTGAAGAGCAAGGTCGAAGAACTTGACAAGGAGAATCTGGCAAATAGGCAGAAGCCTGGATGTGGTAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTGCCTTAAAAAAGAAGTTGAAAGACAAGATGACTGAGTTCCAGATTTTGCGGGAAAAAGTTCATCAAGAGTATCGGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCGCTAGGGCTGACGAAGAGACCATCGAGAAATTAATCGAAACTGGGGATAGCGAACAAATTTTTCAGAAGGCAATCCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGCGCAGTTAGAGAACTGGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTGGACATGGCTGTTTTGGTAGATGCACAGGGGGATATGCTCGACAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAACACTGCACTTCAAAAGGCAAAGAAGCTTCAAAAGAATTCAAGGAAATGGATGTGCATTGCCATAATAATCCTTCTAATCATTGTTGTGGTGGTAGTAGTGGGAGTCCTAAAGCCATGGAATAGTGTACTTTAA 1041 44.76 MKGFGNNVVFDRGGGSDATQGFGSDVLDRDLVQKSFKGTEESLGDNDSFEIPRGQPSRGGDIELGTNAPTSAGDLGLDDFFKKVQDIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKSKVEELDKENLANRQKPGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKVHQEYREVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVVVVGVLKPWNSVL 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8118923 8128792 + CmaCh14G011060.1 Cma14g01106 308089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01106 346 Coils Coil 250 270 - -
Cma14g01106 346 SMART tSNARE_6 242 309 IPR000727 -
Cma14g01106 346 Pfam Syntaxin 79 282 IPR006011 GO:0016020
Cma14g01106 346 PANTHER - 47 339 - -
Cma14g01106 346 PANTHER SYNTAXIN 47 339 IPR045242 -
Cma14g01106 346 CDD SNARE_syntaxin1-like 246 308 - -
Cma14g01106 346 Pfam SNARE domain 283 335 IPR000727 -
Cma14g01106 346 ProSitePatterns Syntaxin / epimorphin family signature. 253 292 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma14g01106 346 Gene3D - 74 201 - -
Cma14g01106 346 MobiDBLite consensus disorder prediction 1 24 - -
Cma14g01106 346 CDD SynN 77 234 IPR006011 GO:0016020
Cma14g01106 346 SMART SynN_4 72 198 IPR006011 GO:0016020
Cma14g01106 346 Coils Coil 77 111 - -
Cma14g01106 346 Gene3D - 238 340 - -
Cma14g01106 346 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 309 IPR000727 -
Cma14g01106 346 SUPERFAMILY t-snare proteins 75 302 IPR010989 GO:0016020|GO:0016192
Cma14g01106 346 MobiDBLite consensus disorder prediction 37 70 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00159 Cma-Chr2:738486 Cma14g01106 Cma-Chr14:8118923 4.97E-13 dispersed
Cma14g01106 Cma-Chr14:8118923 Cma18g00344 Cma-Chr18:1843481 4.79E-90 dispersed
Cma14g01106 Cma-Chr14:8118923 Cma20g00629 Cma-Chr20:2935522 9.64E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01106 K08486 - csv:101203075 493.812