Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01128 ATGGCTAATTCCTTCAACTTTGTGTTCCTTTGGTTGAGTTTTGCAGGCTTTTTGGCAGACCCCATAGCGTGTAGGCTCCTTGATCCCATTGGTATCCAAAAGATCGACGGTGCATGGCGCAATGCTCGTGCCACCTTCTACGGTGACATGGGGGGTGGCGAAACTATGCAGGGAGCTTGCGGGTATGGAAACCTACACGATCAAGGTTATGGGCTAGAGACGGCGGCGATAAGCACAGCACTTTTCAACCACGGTCTAACCTGTGGAGCATGCTTCGAGTTAAAGTGTCTGCCCGGAGGACACTATTCGTGCATACCAAACTCGGGGACAATCAAAATAACCGCCACAAACTTTTGCCCACCAAACTACACGAAAACAGAAGACATTTGGTGCAATCCACCCCAAGAGCACTTCGACCTTTCTCTCTACATGTTTACTAAAATCGCCCCTTATCGTGCTGGTGTCATCAATGTTAGCTATCGTAGGGTACTCTGCCAGAAACAAGGTGGCATCCGGTTCCAATTAAATGGGAACCCATATTGGCTGATCGTCCTACCCTTCAATGTTGGAGGTGCTGGTGATGTTGTTGGTGTTAACATTAAAGGCTCTTCTACTGGGTGGCTTAAGATGTCAAAGAACTGGGGCCAAAATTGGGAGACTGGTACCGTTTTTGTGGGCCAGAGCCTGTCCTTTCAAGTCACTACCAGTGATTTGAGAACCCTTCAATTTGATAATGTCGTGCCTAGCTCTTGGCAGTTCGGCCAAACCTTTGAAGGCAAGCATAATTTCTAA 792 47.98 MANSFNFVFLWLSFAGFLADPIACRLLDPIGIQKIDGAWRNARATFYGDMGGGETMQGACGYGNLHDQGYGLETAAISTALFNHGLTCGACFELKCLPGGHYSCIPNSGTIKITATNFCPPNYTKTEDIWCNPPQEHFDLSLYMFTKIAPYRAGVINVSYRRVLCQKQGGIRFQLNGNPYWLIVLPFNVGGAGDVVGVNIKGSSTGWLKMSKNWGQNWETGTVFVGQSLSFQVTTSDLRTLQFDNVVPSSWQFGQTFEGKHNF 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8566281 8567145 + CmaCh14G011280.1 Cma14g01128 308111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01128 263 SUPERFAMILY PHL pollen allergen 167 259 IPR036749 -
Cma14g01128 263 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Cma14g01128 263 PRINTS Expansin signature 111 121 IPR002963 GO:0009664
Cma14g01128 263 PRINTS Expansin signature 128 145 IPR002963 GO:0009664
Cma14g01128 263 PRINTS Expansin signature 145 158 IPR002963 GO:0009664
Cma14g01128 263 PRINTS Expansin signature 169 181 IPR002963 GO:0009664
Cma14g01128 263 PRINTS Expansin signature 181 202 IPR002963 GO:0009664
Cma14g01128 263 PRINTS Expansin signature 216 237 IPR002963 GO:0009664
Cma14g01128 263 PRINTS Expansin signature 245 261 IPR002963 GO:0009664
Cma14g01128 263 Gene3D - 31 166 IPR036908 -
Cma14g01128 263 PANTHER EXPANSIN-A15 37 263 IPR002963 GO:0009664
Cma14g01128 263 Pfam Lytic transglycolase 74 160 IPR009009 -
Cma14g01128 263 SUPERFAMILY Barwin-like endoglucanases 38 188 IPR036908 -
Cma14g01128 263 Gene3D - 168 263 IPR036749 -
Cma14g01128 263 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Cma14g01128 263 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Cma14g01128 263 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Cma14g01128 263 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Cma14g01128 263 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Cma14g01128 263 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Cma14g01128 263 PANTHER EXPANSIN-A21-RELATED 37 263 - -
Cma14g01128 263 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Cma14g01128 263 SMART dpbb_1 74 160 IPR007112 -
Cma14g01128 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 259 IPR007117 -
Cma14g01128 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 170 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01128 Cma-Chr14:8566281 Cma04g00211 Cma-Chr4:1005461 8.75E-97 dispersed
Cma14g01128 Cma-Chr14:8566281 Cma03g00422 Cma-Chr3:4515929 8.03E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01128 - - cmos:111436984 500.745