Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01148 ATGGGAAGAGGCAGAGTTCAGCTGAAGAGAATAGAGAACAAAATCAGCCGCCAAGTCACCTTCTCAAAGCGTAGAGCTGGTTTGCTCAAAAAGGCCCATGAGATCTCTGTTCTTTGTGATGCAGATGTTGCTTTGATCGTCTTCTCCACCAAAGGCAAGCTCTTTGAGTACTCCTCTCATTCCAGCATGGAGAAAATCTTAGAAAAATATGAAAGATATTCTTATGCAGAGAGACCATTGGCCTCAAATCGAGATTCTGAATCACAGGTAAGTTGGTGTCAGGAGTATCCAAAGCTTGCAGCCAGATTGGAGATTGTGCAGAAGAATTTAAGGCATTATTTGGGTGAAGAGCTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAACAACAACTTGATTCATCACTCAAGCGCATAAGAGCCAGAAAGAACCAACTAATGCAAGAATCCATTTCAAAGCTACACAAAAAGGAAAAGGAACTGCAAGAGGAGAACAGGAAGCTAGCAAATAAGGTAAAAGAGAATGAGACGGTTTGGGTTGAACGTGGACATTGCGAGCTCACAAATTTGGATCATAATCACCACATTTTAGCAACGCCACCACCACTTCCTTCTTTGTCAATTGGAGTAAACTGCCATGGGAGAGGATCAGATGAAGATGAAACAAGGCCAACCAGCACCAACAACATCCAAATACCAGCATGGATGCTTAGCCATGTGACTGAAAACCCTCATAACTAA 744 42.47 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSSHSSMEKILEKYERYSYAERPLASNRDSESQVSWCQEYPKLAARLEIVQKNLRHYLGEELDPLNLRELQSLEQQLDSSLKRIRARKNQLMQESISKLHKKEKELQEENRKLANKVKENETVWVERGHCELTNLDHNHHILATPPPLPSLSIGVNCHGRGSDEDETRPTSTNNIQIPAWMLSHVTENPHN 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9009460 9012942 - CmaCh14G011480.1 Cma14g01148 308131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01148 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma14g01148 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma14g01148 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma14g01148 247 Pfam K-box region 86 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma14g01148 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma14g01148 247 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma14g01148 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cma14g01148 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma14g01148 247 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Cma14g01148 247 PANTHER BNAA09G02740D PROTEIN 1 216 - -
Cma14g01148 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma14g01148 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma14g01148 247 Coils Coil 123 179 - -
Cma14g01148 247 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Cma14g01148 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 216 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00424 Cma14g01148 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00424 Cma-Chr1:2130905 Cma14g01148 Cma-Chr14:9009460 1.44E-128 dispersed
Cma14g01148 Cma-Chr14:9009460 Cma18g00020 Cma-Chr18:80281 1.41E-56 dispersed
Cma16g00680 Cma-Chr16:3539095 Cma14g01148 Cma-Chr14:9009460 1.40E-22 dispersed
Cma14g01148 Cma-Chr14:9009460 Cma14g01149 Cma-Chr14:9050926 8.10E-59 tandem
Cma01g00423 Cma-Chr1:2127490 Cma14g01148 Cma-Chr14:9009460 7.68E-61 wgd
Cma13g01058 Cma-Chr13:8032668 Cma14g01148 Cma-Chr14:9009460 3.48E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36268 PF01486 K-box 6.20E-28 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01148 K09264 - csv:101218674 393.275