Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma14g01163 | ATGCTAATGAATTGCAAAAAAAATGTACAAATTATTTTAGCTGCAGGCAAACATGATGAGAGACATACTATGATTACAAATTCTAAAGAAGAGAATTCCCCTCCAAAACTAGCAGCTTCATCAAGCTCATCGGCGGCAGCGGCGGTGGCAACGCCATGGCTTAGGTTGAAGGATCCGAGGATCGTGCGAGTGTCGCGAGCTTTCGGAGGCAAGGATCGACATAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCAACTGCAATTCAGCTCTATGATCTTCAGGACCGCCTCGGCCTTAATCAGCCAAGCAAGGTCGTCGACTGGCTGCTCAACGTTGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATACCATCTGCAAGCCTCGGCCTTCACTACCAATCTATGCTACCACCTCATACAGCACATAGACCGGAGTTCAAAATCAACTCCGGCATCGACAAGGTCGAAATCGACGACGATGATGAACAAAAGCAACACAAATCCAATTCTAATCCTTCTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTCCATTGGGATCCCTCATCTTCGTCGTCGTCGTCAACAACAAATCTTCCATTCTTTACATCTCAAGCTGAGGACCTTCATAACTTCAATCATGTCACCCCTTTGTCACTCTCAACTGGCTCTCAGTTCTTGGAGTTCAACAATCACTTGCACCAAAATTTCTTCATTAACAACTCTTTGAATACACCTCCTCCTATGCACTCAATAACCCACCCCGCTGTTAGGCCTTTTCATTTCAGCATGGCTACCAAATTTGTTTCTCAAGATAAGAATAACAATGGAGATCCTGCACATAAAGAGGACGACTTCGGTTCTGATGAATGA | 918 | 45.75 | MLMNCKKNVQIILAAGKHDERHTMITNSKEENSPPKLAASSSSSAAAAVATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNVAKDEIDELPPLPIPSASLGLHYQSMLPPHTAHRPEFKINSGIDKVEIDDDDEQKQHKSNSNPSSFSALLNNVSAPPFGFHWDPSSSSSSSTTNLPFFTSQAEDLHNFNHVTPLSLSTGSQFLEFNNHLHQNFFINNSLNTPPPMHSITHPAVRPFHFSMATKFVSQDKNNNGDPAHKEDDFGSDE | 305 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 9212725 | 9213642 | + | CmaCh14G011630.1 | Cma14g01163 | 308146 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma14g01163 | 305 | MobiDBLite | consensus disorder prediction | 286 | 305 | - | - | |
| Cma14g01163 | 305 | MobiDBLite | consensus disorder prediction | 291 | 305 | - | - | |
| Cma14g01163 | 305 | Pfam | TCP family transcription factor | 70 | 143 | IPR017887 | - | |
| Cma14g01163 | 305 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 24 | 176 | IPR005333 | GO:0003700 | |
| Cma14g01163 | 305 | ProSiteProfiles | TCP domain profile. | 70 | 128 | IPR017887 | - | |
| Cma14g01163 | 305 | PANTHER | TRANSCRIPTION FACTOR TCP2-LIKE | 24 | 176 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma03g01413 | Cma-Chr3:8881403 | Cma14g01163 | Cma-Chr14:9212725 | 9.64E-30 | dispersed | |
| Cma07g00094 | Cma-Chr7:537666 | Cma14g01163 | Cma-Chr14:9212725 | 8.54E-30 | dispersed | |
| Cma11g00212 | Cma-Chr11:1067558 | Cma14g01163 | Cma-Chr14:9212725 | 1.46E-41 | dispersed | |
| Cma14g01163 | Cma-Chr14:9212725 | Cma18g00480 | Cma-Chr18:2722292 | 2.89E-24 | dispersed | |
| Cma01g00411 | Cma-Chr1:2080804 | Cma14g01163 | Cma-Chr14:9212725 | 2.12E-82 | wgd | |
| Cma13g01069 | Cma-Chr13:8093105 | Cma14g01163 | Cma-Chr14:9212725 | 2.65E-36 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36270 | PF03634 | TCP | 4.40E-27 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma14g01163 | - | - | csv:101216548 | 398.282 |