Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01180 ATGCCAACGGGCGTGCGCGTGGCGGGGCTTATGCGCGCACCGGCCCCAACCATCAGCGCCGCTTCTTCCCTCTTCCTCTTCCTCTACCTCTCGTCCTCGTCATTAGTGCTCGTCTTGTCTGCCCCATCCGACACCGAAACTCTGCTTGAATTCAAGCGCTCTTTGACCTCAGCCAGGGCTCTTAGAGATTGGAACCCCAAGGTCCCTCCTTGCGACAACAACAGGCCCAATTGGGCGGGCGTGCTGTGTTTGAATGGCCATGTTAGAGGGCTGCGGCTTGAGAATATGGGGCTTAAGGGGGAGGTTAATGTGGATCCCTTGGTTTCTCTGTCTCGTATGCGCACCCTGAGCTTCATGAACAATACCTTGGTTGGGCCTTGGCCTTCTGTTATTAGCAAACTACACAATCTACGCTCCGTTTATCTTTCCTATAACCATTTTTCGGGAGCAATCCCGGACGATGCCTTCACGGGTATGAAATTTTTGAAGAAAGTGTTTTTGACCAATAATGAATTCAACGGCCAAATTCCCTCATCTCTCGCTTCCCTGTCTAGGCTTATGGAATTGAGACTTGATGGAAACAAATTCAGAGGCCAAGTCCCCCGTCTTGAAATGCCTACTTTGAAGAAACTTAATGTTTCCAACAATGAATTGGAAGGCCCCATTCCTCGTAGCTTAAGCCATATGGATCCTTCCTCCTTTGCAGGTAACCGTGATCTGTGTGGGGATCCTTTTCCAGAATGCGAGAGAGCCCTAATTTCATCCGCAGGGCTACTCAAAATCGCAGTGATAGTCATAATTTTGGGGGTAACATTAGCAGTAATAGCTGCAATTTTCATCATAATGAATTTAAGGAGGCAGCCCGCCTTGCAATTAGGGAAGGGGAATGCCGGAGTTACAGAAGAGGATCAGAACAAATACATGAGTTCTAAGCCAACCACGGCGGTAGTTGGCGACGGATACAGATCGACGGAGTCGTCCGTAGCGCAGGCTAAAAGAGGCGCAGAACATGGGAAGCTATTATTTGTGAGAGACGACAGGGAGAAATTCGACTTACAAGACCTCCTCAGAGCATCCGCCGAAATCCTGGGCAGTGGCTCATTCGGCTCTTCCTACAAAGCAACAATACTCTGTAATGCCGTGGTTGTTAAGCGATACAAGCATATGAACAACGTAGGGAGAGAAGAGTTTCATGAACACATGAGACGCCTCGGCCGGTTGACACATCCAAATCTACTTCCCTTGGTTGCTTATTACTACAGAAAAGAAGAGAAGCTGTTGATTTCGGATTTTGTAGATGAAGGGAGTTTGGCGAGCCATCTGCACGGCAACCACAACCTGGAGGAGCCAGGGATTGACTGGGCTACAAGATTGAAGATAATCAGAGGCATAGCAAGAGGAATGTCGTACCTCTACACATCGCTGCCAAGCATAGCAGCACCACACGGACATCTGAAATCATCAAATGTGCTGCTAGACGAATCGTTAGAACCTCTGCTTACGGATTACGGGCTAATCCCCGTGGCTAATGTAGAGCATGGACAGACATTAATGATGGCTTACAAATCACCCGAATACGCTCATCTTGGCCGTATAAGCAAGAAAACTGACGTATGGAGCTTCGGAATTCTGATACTGGAAATGCTAACAGGTAGGTTCCCAGAGAACTACTTGACACGAAATCACGACACGAAATCAGACCTAGCCACTTGGGTAAACAACATGATCAAGGAAAAGAAAACGTCACTAGTGTTCGATGCAGAGCTAGGGCGAGCTAGGGAGAGCAACAAAGGCGAGCTGCTGAAGATGTTGAAGATTGCGTTGAGTTGCTGCGAGGAAGACGTGGAGAGGAGGCTAGATTTGAATCAGGTAGTGGCCCAAATTGAAGATCTGAACGACGCTGATTTGAGCGATAACGATGGAGATAACTTCGCTTCCACATCTCGCAACTCTCAAATGCCTGTTTGA 1968 48.27 MPTGVRVAGLMRAPAPTISAASSLFLFLYLSSSSLVLVLSAPSDTETLLEFKRSLTSARALRDWNPKVPPCDNNRPNWAGVLCLNGHVRGLRLENMGLKGEVNVDPLVSLSRMRTLSFMNNTLVGPWPSVISKLHNLRSVYLSYNHFSGAIPDDAFTGMKFLKKVFLTNNEFNGQIPSSLASLSRLMELRLDGNKFRGQVPRLEMPTLKKLNVSNNELEGPIPRSLSHMDPSSFAGNRDLCGDPFPECERALISSAGLLKIAVIVIILGVTLAVIAAIFIIMNLRRQPALQLGKGNAGVTEEDQNKYMSSKPTTAVVGDGYRSTESSVAQAKRGAEHGKLLFVRDDREKFDLQDLLRASAEILGSGSFGSSYKATILCNAVVVKRYKHMNNVGREEFHEHMRRLGRLTHPNLLPLVAYYYRKEEKLLISDFVDEGSLASHLHGNHNLEEPGIDWATRLKIIRGIARGMSYLYTSLPSIAAPHGHLKSSNVLLDESLEPLLTDYGLIPVANVEHGQTLMMAYKSPEYAHLGRISKKTDVWSFGILILEMLTGRFPENYLTRNHDTKSDLATWVNNMIKEKKTSLVFDAELGRARESNKGELLKMLKIALSCCEEDVERRLDLNQVVAQIEDLNDADLSDNDGDNFASTSRNSQMPV 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9442176 9444825 + CmaCh14G011800.1 Cma14g01180 308163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01180 655 SUPERFAMILY Protein kinase-like (PK-like) 361 630 IPR011009 -
Cma14g01180 655 MobiDBLite consensus disorder prediction 636 655 - -
Cma14g01180 655 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 22 638 - -
Cma14g01180 655 Pfam Leucine rich repeat N-terminal domain 42 83 IPR013210 -
Cma14g01180 655 MobiDBLite consensus disorder prediction 639 655 - -
Cma14g01180 655 ProSiteProfiles Protein kinase domain profile. 357 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g01180 655 SUPERFAMILY L domain-like 42 229 - -
Cma14g01180 655 Gene3D Transferase(Phosphotransferase) domain 1 432 640 - -
Cma14g01180 655 Pfam Protein tyrosine and serine/threonine kinase 361 627 IPR001245 GO:0004672|GO:0006468
Cma14g01180 655 Gene3D Phosphorylase Kinase; domain 1 322 431 - -
Cma14g01180 655 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 22 638 - -
Cma14g01180 655 Pfam Leucine Rich Repeat 208 228 IPR001611 GO:0005515
Cma14g01180 655 Gene3D Ribonuclease Inhibitor 43 203 IPR032675 -
Cma14g01180 655 Gene3D Ribonuclease Inhibitor 204 251 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00617 Cma-Chr5:3101197 Cma14g01180 Cma-Chr14:9442176 2.31E-173 dispersed
Cma05g01436 Cma-Chr5:10603396 Cma14g01180 Cma-Chr14:9442176 2.82E-142 dispersed
Cma10g00345 Cma-Chr10:1598790 Cma14g01180 Cma-Chr14:9442176 0 dispersed
Cma11g00327 Cma-Chr11:1639465 Cma14g01180 Cma-Chr14:9442176 0 dispersed
Cma12g00275 Cma-Chr12:1428803 Cma14g01180 Cma-Chr14:9442176 0 dispersed
Cma12g01333 Cma-Chr12:10144846 Cma14g01180 Cma-Chr14:9442176 1.00E-147 dispersed
Cma14g01180 Cma-Chr14:9442176 Cma04g01496 Cma-Chr4:7601930 1.54E-107 dispersed
Cma01g00001 Cma-Chr1:1425 Cma14g01180 Cma-Chr14:9442176 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69082 PF07714 PK_Tyr_Ser-Thr 2.10E-30 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01180 - - csv:101203276 1045.03