Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g01188 | ATGCAACTGGTACCAAATAATGATGAAAATACAGATGATATTCTGGAACGGGCGCCCATTTTAAGTCAATTGGATTTTCTGCCACAGTCAGTGGGATCATCATCCTCTGCTGAGATTATAGCTATAGGGAGAGAGAGCTCTGGTAGTGATGATGATTTACACAATCTTAATGTTGATGAAACCAGTCATCTGGTGAATGCAGACCAACCACAATGTCGTATATGCCTTGACACTGGAGGAGAAGATTTAATTGCTCCATGCCACTGCAAAGGCACTCAGAAGTATGTCCATAGATCATGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATTATTGTTCAACTGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAATTCTACGGAGAGGAACTAAGGGAAATGTTTGGTTATGAAGAACACCCATATGGGTTCTATGCCATGGCTGTCTTGGCGATCATCTTGGTTGGCTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAACTAACAAAGGAATATATAGTTGAAGATCGAGAACAAAACAAGAACGTTCCTGAATTAGACCCCAGCCATGTTATGGAGCTAAGAATGTTGGGGCTGTATTAA | 780 | 42.44 | MQLVPNNDENTDDILERAPILSQLDFLPQSVGSSSSAEIIAIGRESSGSDDDLHNLNVDETSHLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREQNKNVPELDPSHVMELRMLGLY | 259 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 9513675 | 9515779 | + | CmaCh14G011880.1 | Cma14g01188 | 308171 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g01188 | 259 | PANTHER | OS02G0132300 PROTEIN | 2 | 258 | - | - | |
Cma14g01188 | 259 | Pfam | RING-variant domain | 72 | 119 | IPR011016 | GO:0008270 | |
Cma14g01188 | 259 | SUPERFAMILY | RING/U-box | 67 | 123 | - | - | |
Cma14g01188 | 259 | CDD | RING_CH-C4HC3_MARCH | 72 | 120 | - | - | |
Cma14g01188 | 259 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 64 | 126 | IPR011016 | GO:0008270 | |
Cma14g01188 | 259 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 2 | 258 | - | - | |
Cma14g01188 | 259 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 57 | 131 | IPR013083 | - | |
Cma14g01188 | 259 | SMART | ringv_2 | 71 | 120 | IPR011016 | GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00789 | Cma-Chr3:6088094 | Cma14g01188 | Cma-Chr14:9513675 | 1.87E-11 | dispersed | |
Cma10g00580 | Cma-Chr10:2653003 | Cma14g01188 | Cma-Chr14:9513675 | 7.98E-38 | dispersed | |
Cma11g00552 | Cma-Chr11:2665204 | Cma14g01188 | Cma-Chr14:9513675 | 7.21E-41 | dispersed | |
Cma14g01188 | Cma-Chr14:9513675 | Cma14g00861 | Cma-Chr14:4434862 | 8.77E-07 | dispersed | |
Cma01g00002 | Cma-Chr1:5881 | Cma14g01188 | Cma-Chr14:9513675 | 5.12E-163 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g01188 | - | - | bhj:120075028 | 500.36 |