Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01188 ATGCAACTGGTACCAAATAATGATGAAAATACAGATGATATTCTGGAACGGGCGCCCATTTTAAGTCAATTGGATTTTCTGCCACAGTCAGTGGGATCATCATCCTCTGCTGAGATTATAGCTATAGGGAGAGAGAGCTCTGGTAGTGATGATGATTTACACAATCTTAATGTTGATGAAACCAGTCATCTGGTGAATGCAGACCAACCACAATGTCGTATATGCCTTGACACTGGAGGAGAAGATTTAATTGCTCCATGCCACTGCAAAGGCACTCAGAAGTATGTCCATAGATCATGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATTATTGTTCAACTGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAATTCTACGGAGAGGAACTAAGGGAAATGTTTGGTTATGAAGAACACCCATATGGGTTCTATGCCATGGCTGTCTTGGCGATCATCTTGGTTGGCTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAACTAACAAAGGAATATATAGTTGAAGATCGAGAACAAAACAAGAACGTTCCTGAATTAGACCCCAGCCATGTTATGGAGCTAAGAATGTTGGGGCTGTATTAA 780 42.44 MQLVPNNDENTDDILERAPILSQLDFLPQSVGSSSSAEIIAIGRESSGSDDDLHNLNVDETSHLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREQNKNVPELDPSHVMELRMLGLY 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9513675 9515779 + CmaCh14G011880.1 Cma14g01188 308171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01188 259 PANTHER OS02G0132300 PROTEIN 2 258 - -
Cma14g01188 259 Pfam RING-variant domain 72 119 IPR011016 GO:0008270
Cma14g01188 259 SUPERFAMILY RING/U-box 67 123 - -
Cma14g01188 259 CDD RING_CH-C4HC3_MARCH 72 120 - -
Cma14g01188 259 ProSiteProfiles Zinc finger RING-CH-type profile. 64 126 IPR011016 GO:0008270
Cma14g01188 259 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 258 - -
Cma14g01188 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 131 IPR013083 -
Cma14g01188 259 SMART ringv_2 71 120 IPR011016 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00789 Cma-Chr3:6088094 Cma14g01188 Cma-Chr14:9513675 1.87E-11 dispersed
Cma10g00580 Cma-Chr10:2653003 Cma14g01188 Cma-Chr14:9513675 7.98E-38 dispersed
Cma11g00552 Cma-Chr11:2665204 Cma14g01188 Cma-Chr14:9513675 7.21E-41 dispersed
Cma14g01188 Cma-Chr14:9513675 Cma14g00861 Cma-Chr14:4434862 8.77E-07 dispersed
Cma01g00002 Cma-Chr1:5881 Cma14g01188 Cma-Chr14:9513675 5.12E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01188 - - bhj:120075028 500.36