Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01215 ATGCTTCATTCCGTAATAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAGTGTTGTTAAAGCGAAATGCGAGGAGGATGTTGATGAGGATAAGTTGAAATATCCGTTTCCGGGATTAGTTTCTTCTGGACGATTGGAGGTTCGAGCTTTGACAAATCCAAGCACGGATGAATTTAGTAGAATTGTGGAATCGTGTCTACCGAGCTTTGTCTACTTGCAAGGGGAACAACTAGGAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTTTCTTGAAGATTTATGTGGGCTATTCAATACTGCATTACCAACTGTTGTGTATTTAGAAATCCCAAATGGAGGCAGAATAGCGGAGGCGCTTCATTCTAAGGGAATTCCTTATGTCATGTATTGGAACAGCACATTTTCGTGTTATGCTGCAGCTCATTTTCGTAATGCATTGTTTTCAGTGTTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGTGCTGCTTTTAGGCTTCATTGCATGGGGAGCAATCATGCTCTGCCTGGGATTGTTGACAGTATTACGAGTGATTTAGAGCCACAGGTTATTGGGGAACCCCTAAAGATTAATGTAGAACCCCCCAAGGTCGTCGTAGGTGAAGGTGAAGATGAAGATGGTTCATTAGAAACCCTCACTGCCATAAGTATTCACGATAATAATGTGACCGTGAGATTTCTTATCTGTGGAGTGGCTTGCACGCCGGATGCATGCTTATTGAGATCATTGGAGGATGGCCTTAATGCTCTTTTGAACATTGAAATACGTGGGTGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCGCCACCTCTTCAGGCAGGATCCTTTGCTCGTGGAGTTGTGACGATGCGGTGTGATATGGTGACTTGTAGCTCAGCCCACATCTCAATATTGGTGTCTGGTAGTCCTCATACTTGTTTTGATGATCAGCTCTTAGAGAAACATATCAAACATGAGATTATTGAAAATAGTCAGTTAGTTCATGCCATGTATGATTGTGAGGACAACAAACATCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAGCTAGCACCTGATATGTCATATCGGAGTTTAGTTGCACTCGGCATTGGGGGAGTTCAGGGTTTGCCTGTTGCTTCTTTCGAGAAAGAGGATGCTGAGCGATTGCTCTTCTTTTGTTCAAAAGATGTGAATGATAAACTTTCAGATCAGTTGCTTGTAAGCGTATTACCCAGCTGGTTTAAGCCACCGCCTCCTAGTAGAAAGAGAGTAGAACCAAGCCAAGGAATACGGAGCACCCTTTTGTCACACGATCGTCTTGCATATGCAAACATCCCTTCCATTAGAAGAGTAGGTAGAGAGGAGCCTGCATCAATGAATGGGTTCAAGTCACCTTTACTCTCAACAAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTATTCCACGCGTGCATAGAAATAAAATGATGCCGTTCTCTGGATTGACCGAAGCAGATGGGAACAATGGAGGACAACCCAAGGCTTGTTTTCCTGTTGTTACCCCATCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCCTTTTCGAGCTCATCTCAGTCTAAGCAGATTATTTCCTTGAACCCGCTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCAGAGGAGGAATTCTTGAAGGATGTTATGGAGTTTCTACTACTTAGAGGACATTCACGACTTATACCGCAAGGTGGACTTGAGGAGTTCCCAGACGCAATACTCAACGGAAAGCGTCTTGACCTCTTTAACTTGTATAAGGAGGTGGTCACTCGAGGAGGCTTTCATGTCGGTAATGGTATCAACTGGAAAGGGCAGATCTTCTCTAAGATGCATAACTACACAATGTCCAACAGAATGACTGGTGTCGGAAATACACTGAAACGACATTACGAGACGTACCTTCTCGAATATGAATTGGCTCATGACGATGTAGATGGAGAATGCTGCCTTTTGTGCCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCTCATTTCGGGTGCGATCGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAACAAGAAGAAACCACACAGAGTAGCAAACGGGTCTCCGCAAGGACTAACGAATCCACCACGGATACCTTGA 2361 44.35 MLHSVIAARQTCSLLAVTCGSVVKAKCEEDVDEDKLKYPFPGLVSSGRLEVRALTNPSTDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLFLEDLCGLFNTALPTVVYLEIPNGGRIAEALHSKGIPYVMYWNSTFSCYAAAHFRNALFSVLQSSSTHTWDAFQLARAAFRLHCMGSNHALPGIVDSITSDLEPQVIGEPLKINVEPPKVVVGEGEDEDGSLETLTAISIHDNNVTVRFLICGVACTPDACLLRSLEDGLNALLNIEIRGCKLQGKFSAPPPPLQAGSFARGVVTMRCDMVTCSSAHISILVSGSPHTCFDDQLLEKHIKHEIIENSQLVHAMYDCEDNKHHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSKDVNDKLSDQLLVSVLPSWFKPPPPSRKRVEPSQGIRSTLLSHDRLAYANIPSIRRVGREEPASMNGFKSPLLSTRKRLKVASMRPIPRVHRNKMMPFSGLTEADGNNGGQPKACFPVVTPSKHVTVGSTSATQRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLFNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMSNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYNKKKPHRVANGSPQGLTNPPRIP 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9687300 9694357 - CmaCh14G012150.1 Cma14g01215 308198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01215 786 Gene3D - 573 707 IPR036431 GO:0003677
Cma14g01215 786 SMART ARID_2 594 697 - -
Cma14g01215 786 SUPERFAMILY ARID-like 597 712 IPR036431 GO:0003677
Cma14g01215 786 SUPERFAMILY FYVE/PHD zinc finger 700 765 IPR011011 -
Cma14g01215 786 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 3 774 IPR042293 -
Cma14g01215 786 CDD ARID 599 697 - -
Cma14g01215 786 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Cma14g01215 786 CDD PHD_ARID4_like 707 758 - -
Cma14g01215 786 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01215 - - - cmax:111479879 1565.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00017 Cma-Chr1:66960 Cma14g01215 Cma-Chr14:9687300 0 dispersed
Cma14g01215 Cma-Chr14:9687300 Cma17g00656 Cma-Chr17:5512746 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00095 . 1 358 ARID Transcription Factor Family AT1G04880 56.8 2.5e-106 383.3
Cma08g01025 . 60 399 ARID Transcription Factor Family AT1G04880 60.3 1.2e-105 380.9
Cma01g02043 . 141 420 ARID Transcription Factor Family AT1G20910 67.5 2.2e-103 373.2
Cma16g01291 . 163 432 ARID Transcription Factor Family AT1G20910 60.3 2.7e-88 323.2
Cma09g00079 CST 16 315 ARID Transcription Factor Family AT1G76110 67.0 1.3e-112 403.7
Cma01g01993 CST 16 312 ARID Transcription Factor Family AT1G76110 65.3 3.6e-110 395.6
Cma01g02043 . 140 450 ARID Transcription Factor Family AT1G76510 72.8 1.6e-126 450.3
Cma16g01291 . 154 462 ARID Transcription Factor Family AT1G76510 61.6 8.2e-107 384.8
Cma01g00017 . 1 785 ARID Transcription Factor Family AT3G43240 58.4 6.1e-259 891.0
Cma14g01215 . 1 782 ARID Transcription Factor Family AT3G43240 57.9 6.1e-259 891.0
Cma17g00656 . 2 771 ARID Transcription Factor Family AT3G43240 56.9 1.3e-253 873.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36273 PF01388 ARID 1.20E-13 CL0123 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01215 Cma_Chr14 FPKM 10.482072 10.424485 9.963814 10.128931 15.371831 15.529001 16.362354 8.201557 8.303458 7.44337