Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01215 ATGCTTCATTCCGTAATAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAGTGTTGTTAAAGCGAAATGCGAGGAGGATGTTGATGAGGATAAGTTGAAATATCCGTTTCCGGGATTAGTTTCTTCTGGACGATTGGAGGTTCGAGCTTTGACAAATCCAAGCACGGATGAATTTAGTAGAATTGTGGAATCGTGTCTACCGAGCTTTGTCTACTTGCAAGGGGAACAACTAGGAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTTTCTTGAAGATTTATGTGGGCTATTCAATACTGCATTACCAACTGTTGTGTATTTAGAAATCCCAAATGGAGGCAGAATAGCGGAGGCGCTTCATTCTAAGGGAATTCCTTATGTCATGTATTGGAACAGCACATTTTCGTGTTATGCTGCAGCTCATTTTCGTAATGCATTGTTTTCAGTGTTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGTGCTGCTTTTAGGCTTCATTGCATGGGGAGCAATCATGCTCTGCCTGGGATTGTTGACAGTATTACGAGTGATTTAGAGCCACAGGTTATTGGGGAACCCCTAAAGATTAATGTAGAACCCCCCAAGGTCGTCGTAGGTGAAGGTGAAGATGAAGATGGTTCATTAGAAACCCTCACTGCCATAAGTATTCACGATAATAATGTGACCGTGAGATTTCTTATCTGTGGAGTGGCTTGCACGCCGGATGCATGCTTATTGAGATCATTGGAGGATGGCCTTAATGCTCTTTTGAACATTGAAATACGTGGGTGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCGCCACCTCTTCAGGCAGGATCCTTTGCTCGTGGAGTTGTGACGATGCGGTGTGATATGGTGACTTGTAGCTCAGCCCACATCTCAATATTGGTGTCTGGTAGTCCTCATACTTGTTTTGATGATCAGCTCTTAGAGAAACATATCAAACATGAGATTATTGAAAATAGTCAGTTAGTTCATGCCATGTATGATTGTGAGGACAACAAACATCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAGCTAGCACCTGATATGTCATATCGGAGTTTAGTTGCACTCGGCATTGGGGGAGTTCAGGGTTTGCCTGTTGCTTCTTTCGAGAAAGAGGATGCTGAGCGATTGCTCTTCTTTTGTTCAAAAGATGTGAATGATAAACTTTCAGATCAGTTGCTTGTAAGCGTATTACCCAGCTGGTTTAAGCCACCGCCTCCTAGTAGAAAGAGAGTAGAACCAAGCCAAGGAATACGGAGCACCCTTTTGTCACACGATCGTCTTGCATATGCAAACATCCCTTCCATTAGAAGAGTAGGTAGAGAGGAGCCTGCATCAATGAATGGGTTCAAGTCACCTTTACTCTCAACAAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTATTCCACGCGTGCATAGAAATAAAATGATGCCGTTCTCTGGATTGACCGAAGCAGATGGGAACAATGGAGGACAACCCAAGGCTTGTTTTCCTGTTGTTACCCCATCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCCTTTTCGAGCTCATCTCAGTCTAAGCAGATTATTTCCTTGAACCCGCTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCAGAGGAGGAATTCTTGAAGGATGTTATGGAGTTTCTACTACTTAGAGGACATTCACGACTTATACCGCAAGGTGGACTTGAGGAGTTCCCAGACGCAATACTCAACGGAAAGCGTCTTGACCTCTTTAACTTGTATAAGGAGGTGGTCACTCGAGGAGGCTTTCATGTCGGTAATGGTATCAACTGGAAAGGGCAGATCTTCTCTAAGATGCATAACTACACAATGTCCAACAGAATGACTGGTGTCGGAAATACACTGAAACGACATTACGAGACGTACCTTCTCGAATATGAATTGGCTCATGACGATGTAGATGGAGAATGCTGCCTTTTGTGCCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCTCATTTCGGGTGCGATCGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAACAAGAAGAAACCACACAGAGTAGCAAACGGGTCTCCGCAAGGACTAACGAATCCACCACGGATACCTTGA 2361 44.35 MLHSVIAARQTCSLLAVTCGSVVKAKCEEDVDEDKLKYPFPGLVSSGRLEVRALTNPSTDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLFLEDLCGLFNTALPTVVYLEIPNGGRIAEALHSKGIPYVMYWNSTFSCYAAAHFRNALFSVLQSSSTHTWDAFQLARAAFRLHCMGSNHALPGIVDSITSDLEPQVIGEPLKINVEPPKVVVGEGEDEDGSLETLTAISIHDNNVTVRFLICGVACTPDACLLRSLEDGLNALLNIEIRGCKLQGKFSAPPPPLQAGSFARGVVTMRCDMVTCSSAHISILVSGSPHTCFDDQLLEKHIKHEIIENSQLVHAMYDCEDNKHHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSKDVNDKLSDQLLVSVLPSWFKPPPPSRKRVEPSQGIRSTLLSHDRLAYANIPSIRRVGREEPASMNGFKSPLLSTRKRLKVASMRPIPRVHRNKMMPFSGLTEADGNNGGQPKACFPVVTPSKHVTVGSTSATQRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLFNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMSNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYNKKKPHRVANGSPQGLTNPPRIP 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9687300 9694357 - CmaCh14G012150.1 Cma14g01215 308198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01215 786 Gene3D - 573 707 IPR036431 GO:0003677
Cma14g01215 786 SMART ARID_2 594 697 - -
Cma14g01215 786 SUPERFAMILY ARID-like 597 712 IPR036431 GO:0003677
Cma14g01215 786 SUPERFAMILY FYVE/PHD zinc finger 700 765 IPR011011 -
Cma14g01215 786 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 3 774 IPR042293 -
Cma14g01215 786 CDD ARID 599 697 - -
Cma14g01215 786 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Cma14g01215 786 CDD PHD_ARID4_like 707 758 - -
Cma14g01215 786 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00017 Cma-Chr1:66960 Cma14g01215 Cma-Chr14:9687300 0 dispersed
Cma14g01215 Cma-Chr14:9687300 Cma17g00656 Cma-Chr17:5512746 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36273 PF01388 ARID 1.20E-13 CL0123 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01215 - - cmax:111479879 1565.82