Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01220 ATGGATTCCGTCAAGTCGTTCAAGGGCTACGGCAAGGTAGACGAGCTCGAACACCAAGCTTTCCGCCAGAAAACTCGCCGCCGACTCATTATACTACTTCTCTCTATTGTTCTTCTTATTGCTTTGGTCATCGGCGCCGTCGTCGGAATCGTCATTCATAAACGGAACTCTTCGTCTTCTTCGACGACGAGTTCGACTCCTCCCACTGAGCTCCCTCCGGCCGCTTCACTCAAAACTCTCTGTAGCGTCACTCAGTATCCGAGTTCCTGTCAGTCCTCTCTCGAAAACTCCAACACCACCGATCCGATATTTCTCTTCAAGCTTTCTCTCCGAGTCGCCACCGATTCGATCTCAAAACTCTCTGATTATGCCTCTAACCTAAATTCCAGTACTAGTGATGTGAAGGTTAAAGCTGCAATTGGAATCTGTACGTCTGTTTTTAAAGACGCCATTGACACACTAAACGACACCGTTTCATCCATGGAAGTGGATCGCCATGGCGAGAAGTTCTTGTCGCCGTCGAGGATTGAAGATCTGAAAACCTGGCTGAGCACCACAATCACAGACCAAGAAACCTGCCTCGATGCCATTCGAGATCTAAACCATACGGCGGTTCTCGAAAATTTGCAAGCGGTAATGGCGAACTCGACCGAGTTCACTAGCAATAGTTTAGCGATTGTGACGAAAATTTTGGGGTTGTTGGCGAATTTCAACATCCCTATCCACCGGAAGCTGATGGCGTTCCCGGAGTGGGTAAGCCCCGGCGATCGGAGGCTTCTGCAGGAGAACAATGTGACGGCACATGCGACGGTGTCGAAGGATGGGACAGAGGAGTACACGACGATCAAAGAGGCCGTAGCAGCGGTGCCAAAGAAGAGTAAAGAAAGATTCATCATCTATGTAAAAGAAGGATTATACGAAGAGAATGTGATTCTGGATAAGAGCAAGTGGAATGTTATGATGTACGGAGATGGCAGAACCAGAACCATCGTTTCAGGCCGCCTTAACTTCATCGACGGCACTCCCACCTACGCCACCGCCACTTTTGCTGTTCAAGGCAAAGGGTTCATCGGGAAGGATATGGGGTTCATCAACACAGCCGGTCCGGCCAAACACCAGGCCGTCGCCTTCCGGTCAGGCTCCGACCTATCTGTGATGTACGGATGTTCATTTGATGGCTATCAAGACACTCTTTACGCCCATTCAAACCGTCAATTCTACAGGAACTGCGACATCACCGGCACTATCGACTTCATCTTCGGCAACGCCGCCGCGGTATTCCAGAACTGCAACATCCGGCCCAGGCAGCCACTTCCCAACCAGTTCAACACCATCACAGCCCAAGGCAAAAAGGACATCAACCAAAACTCCGGCATTTCCATTCAGAAATGCACTTTTTCGGCCTACAACGACAGTCTCACTGCCCCCACTTACTTGGGGCGGCCATGGAAGGAATTTTCCACCACCGTGATTATGCAGTCGGAGATTGGGGGCTTCCTGCAGCCCGTGGGGTGGAAGGAATGGGTGAGCGGGCAGGACCCACCCAGCAGCATATTTTACGGGGAGTATCAGAATAGTGGGCCTGGATCCAACGTGGAGAAGAGGGTCAAATGGACCGGTTACAGGCCCAGTCTTACAGACGCCGAGGCCGCAAAGTTCACCGTCCGGACGTTCCTCAACGGCGAGGATTGGTTGCCGGCCACCAGTGTAAAATTTGATTCATCCTTGTGA 1731 51.24 MDSVKSFKGYGKVDELEHQAFRQKTRRRLIILLLSIVLLIALVIGAVVGIVIHKRNSSSSSTTSSTPPTELPPAASLKTLCSVTQYPSSCQSSLENSNTTDPIFLFKLSLRVATDSISKLSDYASNLNSSTSDVKVKAAIGICTSVFKDAIDTLNDTVSSMEVDRHGEKFLSPSRIEDLKTWLSTTITDQETCLDAIRDLNHTAVLENLQAVMANSTEFTSNSLAIVTKILGLLANFNIPIHRKLMAFPEWVSPGDRRLLQENNVTAHATVSKDGTEEYTTIKEAVAAVPKKSKERFIIYVKEGLYEENVILDKSKWNVMMYGDGRTRTIVSGRLNFIDGTPTYATATFAVQGKGFIGKDMGFINTAGPAKHQAVAFRSGSDLSVMYGCSFDGYQDTLYAHSNRQFYRNCDITGTIDFIFGNAAAVFQNCNIRPRQPLPNQFNTITAQGKKDINQNSGISIQKCTFSAYNDSLTAPTYLGRPWKEFSTTVIMQSEIGGFLQPVGWKEWVSGQDPPSSIFYGEYQNSGPGSNVEKRVKWTGYRPSLTDAEAAKFTVRTFLNGEDWLPATSVKFDSSL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9709640 9711972 - CmaCh14G012200.1 Cma14g01220 308203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01220 576 Pfam Plant invertase/pectin methylesterase inhibitor 77 226 IPR006501 GO:0004857
Cma14g01220 576 Gene3D - 262 576 IPR012334 -
Cma14g01220 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 231 IPR035513 -
Cma14g01220 576 CDD PMEI-like_3 79 230 - -
Cma14g01220 576 SUPERFAMILY Pectin lyase-like 267 573 IPR011050 -
Cma14g01220 576 PANTHER PECTINESTERASE 8 573 - -
Cma14g01220 576 Pfam Pectinesterase 269 561 IPR000070 GO:0030599|GO:0042545
Cma14g01220 576 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Cma14g01220 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 230 IPR035513 -
Cma14g01220 576 PANTHER PECTINESTERASE 1-RELATED 8 573 - -
Cma14g01220 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 230 IPR006501 GO:0004857
Cma14g01220 576 SMART PMEI_2 72 226 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01220 Cma-Chr14:9709640 Cma08g01239 Cma-Chr8:7592616 1.02E-143 dispersed
Cma13g00489 Cma-Chr13:5244755 Cma14g01220 Cma-Chr14:9709640 3.83E-163 transposed
Cma14g01220 Cma-Chr14:9709640 Cma17g00648 Cma-Chr17:5472057 9.16E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01220 - - csv:101207508 1003.82