Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01221 ATGGCACAAACCGACGACTCCACCGTCGCCGGAGCACCCATCACCAGCAGCCCCACTTCCATATCCAAAAAGAAGCACAATCTCTTCATTTTAGCCCTCTCAGCTGCGCTTCTCCTCGACGGCGTCTCCTCGGACGACCACGTGGCCGCCGTGAGAAGCACATGCGCGGTAACTCTGTATCCAGAGCTATGCCAGTCGACAATATCCACCGCCGTGGAAACCAGCTCGAAGAAGGTGTCGAGTTCAAAAGACATAATCGAAGCGTCGGTAAACATCACGATTTCTGCAGTGAAACAAAACTATAAAAGCATCAAGAAATTGGTTGAAACGACGAAGAATCTGACAAAGCGAGAGAAAATTGCGCTCCATGACTGTCTGGAAACAGGGGAGGAGACGCTTAGAGAGCTGTATGAGGTAGTGGAAGATCTCAATGAGTATCCCAAAAAGAAATCTCTGCCACAATACGCCGATGACCTCAAAACCTTGCTCAGTTCCGCCATTACTAATCAGGAGACATGCGTGGACGGATTTTCACACGACAGAGCCGACAAGAAGATACGAGAATCATTGCTAGCTGGACAAATTCATGTCGAGAAATTGTGCAGTGTTGCCTTAGCCTTGATTAAGAATCTCACCGACACCGACATTGCCAATCATTACAAGCTTACGGGGAACAACATCCAAGGAAGGTCCATGGCCATGTCGGAATTTAATTGGCCGGATTGGATGTCGCCCGGTGACCGGAAGCTTTTGCAAGCGTCGTCTACGGCGACTCCGGATGTTGTAGTGGCAGCTGATGGGAGTGGCGATTTCCAGACGGTGTCGGCGGCTGTTGCGGCGGCGCCGAGTAGGAGTAGCCGGAGGTATATAATAAGAATTAAGGCGGGGGTTTATAGAGAAAATGTGAATGTGCCGAGTAGTAAGACGAATATAATGTTTTGGGGAGACGGAAGAACCACCACCATAATCACCGGGAATAGGAATGTCGTCGACGGCAGCACCACCTTCAACTCCGCCACCGTTGCGGCGGTGGGAGAAAGGTTCTTGGCGAGAGATATTACTTTTCAGAACACCGCCGGTCCGTCAAAGCACCAAGCGGTGGCTCTCCGCGTCGGCTCCGACCTCTCAGCCTTTTACCGCTGCGACATGCTCGCTTATCAAGACACGCTTTACGTCCACTCCAACCGTCAATTCTACGTCAGCTGCATCATCGTCGGCACCGTTGATTTCATCTTCGGCAATGCGGCCGCCGTCATTCAAAACTCCGACATCCACGCCCGCCGCCCCAATCCTGGCCAGAAGAATATGGTCACTGCACAGGGAAGAACCGACCCAAATCAGAACACCGGGATCGTCATCCAGAAATGCCGAATCGGAACCACCTCCGATTTGCAGCCGGTGATCAGAAATTTCCCCACGTTTCTGGGGAGGCCGTGGCAGAGATACTCGAGGACGGTGGTTATGCAGACGAGCATTAGCAATGTGATTGATCCAGCGGGATGGCACATTTGGGATGGGAATTTTGCGCTCGATACTCTGTTTTATGCAGAGTTTCAGAATAGTGGGGCCGGTGCTGATACCTCCAGAAGAGTGACGTGGAAGGGGTACAGGGTTATTAGCAGTGCGGCGGAAGCTGAGGGCTTCACGGCTGGGAAGTTCATCAGCGGCGGCACATGGCTGAGCTCCACCGGATTCCCATTTTCACTTGGACTGTAA 1716 52.16 MAQTDDSTVAGAPITSSPTSISKKKHNLFILALSAALLLDGVSSDDHVAAVRSTCAVTLYPELCQSTISTAVETSSKKVSSSKDIIEASVNITISAVKQNYKSIKKLVETTKNLTKREKIALHDCLETGEETLRELYEVVEDLNEYPKKKSLPQYADDLKTLLSSAITNQETCVDGFSHDRADKKIRESLLAGQIHVEKLCSVALALIKNLTDTDIANHYKLTGNNIQGRSMAMSEFNWPDWMSPGDRKLLQASSTATPDVVVAADGSGDFQTVSAAVAAAPSRSSRRYIIRIKAGVYRENVNVPSSKTNIMFWGDGRTTTIITGNRNVVDGSTTFNSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFYVSCIIVGTVDFIFGNAAAVIQNSDIHARRPNPGQKNMVTAQGRTDPNQNTGIVIQKCRIGTTSDLQPVIRNFPTFLGRPWQRYSRTVVMQTSISNVIDPAGWHIWDGNFALDTLFYAEFQNSGAGADTSRRVTWKGYRVISSAAEAEGFTAGKFISGGTWLSSTGFPFSLGL 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9713508 9715822 - CmaCh14G012210.1 Cma14g01221 308204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01221 571 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Cma14g01221 571 PANTHER PECTINESTERASE 46 570 - -
Cma14g01221 571 Pfam Pectinesterase 260 556 IPR000070 GO:0030599|GO:0042545
Cma14g01221 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 212 IPR035513 -
Cma14g01221 571 Gene3D - 254 571 IPR012334 -
Cma14g01221 571 CDD PMEI-like_3 53 212 - -
Cma14g01221 571 TIGRFAM PME_inhib: pectinesterase inhibitor domain 29 212 IPR006501 GO:0004857
Cma14g01221 571 SUPERFAMILY Pectin lyase-like 254 570 IPR011050 -
Cma14g01221 571 SMART PMEI_2 46 207 IPR006501 GO:0004857
Cma14g01221 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 213 IPR035513 -
Cma14g01221 571 PANTHER PECTINESTERASE 46 570 - -
Cma14g01221 571 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Cma14g01221 571 Pfam Plant invertase/pectin methylesterase inhibitor 50 207 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01221 Cma-Chr14:9713508 Cma17g01067 Cma-Chr17:7630092 1.22E-161 dispersed
Cma14g01221 Cma-Chr14:9713508 Cma17g00648 Cma-Chr17:5472057 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01221 K01051 - csv:101207996 879.011