Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01229 ATGAGACCGCTCCAGCCGCCACAGGGTGTGAATCCGACCACCGATCGTCCTCGTCGCCGTCCCAATCTAACCCTTCCTCTTCCGCAGCGGGACAATACGTCTTTGGCGGTTCCTCTCCCTTTGCCTCCTACCTCCTCCAACGCTGCGCCTCCTTCCACCAGTCAACTTCACAACGGCAACCGCCCGCCGAACCCTCTTCCTCAGCAGCATCAGCCTTTTAGCCTTGCGGACTTCGAGCGAGTGAGCCGAATCGGAAGTGGATGTGGAGGTACCGTCTACAAAGTGATTCACCGACCTTCTGGCCGCGTCTATGCTCTCAAGGTTATTTACGGTAACCATGAGGATGCGGTTAGGCTCCAGATGGGCCGAGAGGTCAAGATCCTTCGCGACGTTGACAATCCCTATGTGGTCAAGTGCCATGATATGTTCGATCATAACGGGGAAATCCAGGTTCTCCTTGAGTACATGGATCGGGGTTCTTTGGAAGGAACGCATATCCCTCAGGAGCACCATCTCTCTGATTTGGCTCGCCAGATTCTTAGTGGCCTCGCCTATCTCCATAGCCGCCGCATCGTCCATCGCGACATCAAGCCCTCGAATCTCCTCATCAATTCCCGAAGGCAGGTTAAGATCGCTGATTTCGGCGTCGGTCGAATCTTGGAACAGACTATGGATCCTTGCAATTCCTCGGTTGGAACTATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGCCAGTACAATGGCTATGCTGGGGACATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTCGGACGGTTTCCTCTCGCTGTCGAGAGGCCTGGGGATTGGGCGAGCTTGATGTGCGCTATATGTATGGCTCAGCCACCGGAGGCGCCGCCCACTGCTTCATCAGAGTTTCGCCACTTCATTGCCTGCTGTTTGCAGAGAGAGGCTCGGAGAAGATGGACTGCAGCTGCATTACTGGAACATCCGTTCATTACGACGAAAAATGGAGCGAATCAATACCAGAATCAGCCGGCTCATCACCAGAATCTTCGTCAACTGTTACCTCCTCCGCCCCTTCATCCTTCCAGCCTTTCCTGA 1104 53.71 MRPLQPPQGVNPTTDRPRRRPNLTLPLPQRDNTSLAVPLPLPPTSSNAAPPSTSQLHNGNRPPNPLPQQHQPFSLADFERVSRIGSGCGGTVYKVIHRPSGRVYALKVIYGNHEDAVRLQMGREVKILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASSEFRHFIACCLQREARRRWTAAALLEHPFITTKNGANQYQNQPAHHQNLRQLLPPPPLHPSSLS 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9753485 9754588 - CmaCh14G012290.1 Cma14g01229 308212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01229 367 CDD PKc_MAPKK_plant_like 76 334 - -
Cma14g01229 367 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 15 348 - -
Cma14g01229 367 Gene3D Phosphorylase Kinase; domain 1 61 157 - -
Cma14g01229 367 SUPERFAMILY Protein kinase-like (PK-like) 58 356 IPR011009 -
Cma14g01229 367 ProSiteProfiles Protein kinase domain profile. 78 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g01229 367 SMART serkin_6 78 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g01229 367 Pfam Protein kinase domain 78 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g01229 367 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Cma14g01229 367 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 15 348 - -
Cma14g01229 367 MobiDBLite consensus disorder prediction 1 71 - -
Cma14g01229 367 MobiDBLite consensus disorder prediction 48 64 - -
Cma14g01229 367 Gene3D Transferase(Phosphotransferase) domain 1 159 355 - -
Cma14g01229 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01229 K13413 MKK4_5; mitogen-activated protein kinase kinase 4/5 [EC:2.7.12.2] - csv:101219669 630.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00976 Cma-Chr13:7605521 Cma14g01229 Cma-Chr14:9753485 6.03E-108 dispersed
Cma14g00668 Cma-Chr14:3361622 Cma14g01229 Cma-Chr14:9753485 2.90E-42 dispersed
Cma14g01229 Cma-Chr14:9753485 Cma18g00086 Cma-Chr18:383549 5.94E-89 dispersed
Cma01g00023 Cma-Chr1:99519 Cma14g01229 Cma-Chr14:9753485 0 wgd
Cma12g01322 Cma-Chr12:10107708 Cma14g01229 Cma-Chr14:9753485 3.72E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00741 CST 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.5 1.5e-135 479.9
Cma12g01322 . 60 384 MAP Kinase Kinase Gene Family AT4G26070 67.8 2.5e-127 452.6
Cma11g00712 CST 28 326 MAP Kinase Kinase Gene Family AT4G26070 69.2 2.1e-121 433.0
Cma12g01275 CST 26 346 MAP Kinase Kinase Gene Family AT4G26070 55.0 6.7e-104 374.8
Cma05g01373 CST 136 427 MAP Kinase Kinase Gene Family AT4G26070 57.3 6.9e-101 364.8
Cma10g00741 CST 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 4.7e-134 474.9
Cma11g00712 CST 1 327 MAP Kinase Kinase Gene Family AT4G29810 67.0 2.4e-130 462.6
Cma12g01322 . 34 358 MAP Kinase Kinase Gene Family AT4G29810 63.1 9.9e-116 414.1
Cma12g01275 CST 10 321 MAP Kinase Kinase Gene Family AT4G29810 59.1 2.2e-107 386.3
Cma05g01373 CST 128 400 MAP Kinase Kinase Gene Family AT4G29810 61.9 1.2e-100 364.0
Cma14g00668 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.9 1.2e-229 793.1
Cma14g01229 . 1 365 MAP Kinase Kinase Gene Family AT1G51660 67.7 3.7e-132 468.8
Cma01g00023 . 1 371 MAP Kinase Kinase Gene Family AT1G51660 70.0 3.2e-128 455.7
Cma13g00976 . 48 317 MAP Kinase Kinase Gene Family AT1G51660 54.8 1.6e-82 303.9
Cma18g00086 . 31 306 MAP Kinase Kinase Gene Family AT1G51660 54.7 7.7e-82 301.6
Cma14g01229 . 1 365 MAP Kinase Kinase Gene Family AT3G21220 64.5 6.1e-129 458.0
Cma01g00023 . 1 371 MAP Kinase Kinase Gene Family AT3G21220 68.5 1.0e-128 457.2
Cma13g00976 . 48 313 MAP Kinase Kinase Gene Family AT3G21220 54.9 1.0e-83 307.8
Cma18g00086 . 35 304 MAP Kinase Kinase Gene Family AT3G21220 55.2 2.5e-82 303.1
Cma12g01275 CST 1 346 MAP Kinase Kinase Gene Family AT5G56580 82.9 1.6e-164 576.2
Cma05g01373 CST 131 430 MAP Kinase Kinase Gene Family AT5G56580 84.7 3.9e-147 518.5
Cma10g00741 CST 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.1 1.3e-118 423.7
Cma11g00712 CST 7 328 MAP Kinase Kinase Gene Family AT5G56580 58.5 2.5e-109 392.9
Cma12g01322 . 34 383 MAP Kinase Kinase Gene Family AT5G56580 55.1 2.3e-107 386.3
Cma13g00976 . 1 311 MAP Kinase Kinase Gene Family AT1G18350 62.8 2.6e-107 386.0
Cma18g00086 . 1 302 MAP Kinase Kinase Gene Family AT1G18350 64.0 2.4e-105 379.4
Cma01g00023 . 79 338 MAP Kinase Kinase Gene Family AT1G18350 52.8 3.1e-76 282.7
Cma13g00976 . 1 299 MAP Kinase Kinase Gene Family AT3G06230 50.5 2.2e-79 293.1
Cma18g00086 . 1 290 MAP Kinase Kinase Gene Family AT3G06230 50.2 2.3e-76 283.1
Cma13g00976 . 1 311 MAP Kinase Kinase Gene Family AT1G73500 66.3 1.4e-113 406.8
Cma18g00086 . 1 302 MAP Kinase Kinase Gene Family AT1G73500 65.5 1.7e-109 393.3
Cma01g00023 . 79 338 MAP Kinase Kinase Gene Family AT1G73500 52.8 1.7e-77 287.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69084 PF00069 Pkinase 3.00E-60 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01229 Cma_Chr14 FPKM 31.488224 33.188538 23.488235 22.128904 22.362732 21.569929 21.342981 9.066671 10.057396 7.201625