Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01229 ATGAGACCGCTCCAGCCGCCACAGGGTGTGAATCCGACCACCGATCGTCCTCGTCGCCGTCCCAATCTAACCCTTCCTCTTCCGCAGCGGGACAATACGTCTTTGGCGGTTCCTCTCCCTTTGCCTCCTACCTCCTCCAACGCTGCGCCTCCTTCCACCAGTCAACTTCACAACGGCAACCGCCCGCCGAACCCTCTTCCTCAGCAGCATCAGCCTTTTAGCCTTGCGGACTTCGAGCGAGTGAGCCGAATCGGAAGTGGATGTGGAGGTACCGTCTACAAAGTGATTCACCGACCTTCTGGCCGCGTCTATGCTCTCAAGGTTATTTACGGTAACCATGAGGATGCGGTTAGGCTCCAGATGGGCCGAGAGGTCAAGATCCTTCGCGACGTTGACAATCCCTATGTGGTCAAGTGCCATGATATGTTCGATCATAACGGGGAAATCCAGGTTCTCCTTGAGTACATGGATCGGGGTTCTTTGGAAGGAACGCATATCCCTCAGGAGCACCATCTCTCTGATTTGGCTCGCCAGATTCTTAGTGGCCTCGCCTATCTCCATAGCCGCCGCATCGTCCATCGCGACATCAAGCCCTCGAATCTCCTCATCAATTCCCGAAGGCAGGTTAAGATCGCTGATTTCGGCGTCGGTCGAATCTTGGAACAGACTATGGATCCTTGCAATTCCTCGGTTGGAACTATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGCCAGTACAATGGCTATGCTGGGGACATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTCGGACGGTTTCCTCTCGCTGTCGAGAGGCCTGGGGATTGGGCGAGCTTGATGTGCGCTATATGTATGGCTCAGCCACCGGAGGCGCCGCCCACTGCTTCATCAGAGTTTCGCCACTTCATTGCCTGCTGTTTGCAGAGAGAGGCTCGGAGAAGATGGACTGCAGCTGCATTACTGGAACATCCGTTCATTACGACGAAAAATGGAGCGAATCAATACCAGAATCAGCCGGCTCATCACCAGAATCTTCGTCAACTGTTACCTCCTCCGCCCCTTCATCCTTCCAGCCTTTCCTGA 1104 53.71 MRPLQPPQGVNPTTDRPRRRPNLTLPLPQRDNTSLAVPLPLPPTSSNAAPPSTSQLHNGNRPPNPLPQQHQPFSLADFERVSRIGSGCGGTVYKVIHRPSGRVYALKVIYGNHEDAVRLQMGREVKILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASSEFRHFIACCLQREARRRWTAAALLEHPFITTKNGANQYQNQPAHHQNLRQLLPPPPLHPSSLS 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9753485 9754588 - CmaCh14G012290.1 Cma14g01229 308212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01229 367 CDD PKc_MAPKK_plant_like 76 334 - -
Cma14g01229 367 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 15 348 - -
Cma14g01229 367 Gene3D Phosphorylase Kinase; domain 1 61 157 - -
Cma14g01229 367 SUPERFAMILY Protein kinase-like (PK-like) 58 356 IPR011009 -
Cma14g01229 367 ProSiteProfiles Protein kinase domain profile. 78 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g01229 367 SMART serkin_6 78 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g01229 367 Pfam Protein kinase domain 78 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g01229 367 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Cma14g01229 367 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 15 348 - -
Cma14g01229 367 MobiDBLite consensus disorder prediction 1 71 - -
Cma14g01229 367 MobiDBLite consensus disorder prediction 48 64 - -
Cma14g01229 367 Gene3D Transferase(Phosphotransferase) domain 1 159 355 - -
Cma14g01229 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00976 Cma-Chr13:7605521 Cma14g01229 Cma-Chr14:9753485 6.03E-108 dispersed
Cma14g00668 Cma-Chr14:3361622 Cma14g01229 Cma-Chr14:9753485 2.90E-42 dispersed
Cma14g01229 Cma-Chr14:9753485 Cma18g00086 Cma-Chr18:383549 5.94E-89 dispersed
Cma01g00023 Cma-Chr1:99519 Cma14g01229 Cma-Chr14:9753485 0 wgd
Cma12g01322 Cma-Chr12:10107708 Cma14g01229 Cma-Chr14:9753485 3.72E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69084 PF00069 Pkinase 3.00E-60 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01229 K13413 - csv:101219669 630.943