Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01236 ATGAACTTTGCAGAAATACCCATAAAAAAACTAGCACCTCCCAAGAACAACGTACCCTCCCCCTCTCTGTCTTTCAAGCTTTCAAGAACAATGAATTCAAGTCCAAAGACCTGCACCACCTCTCCTTTCACAGCAACTCAATGGCAAGAACTAGAACACCAAGCTTTGATCTTCAAATACATGGTTTCAGGAGTACCAATCCCTCCTGATCTAATCTTTTCTGTGAAAAGAAGCTTGGATTCCTCCATTTCTGCAAGACTTTTCCCTCACCAACCCATTGGGTGGGGGTGTTTTGAGATGGGTTTTGGCAGAAAAACAGACCCAGAACCAGGAAGGTGCAGAAGAACAGATGGCAAAAAATGGAGATGCTCAAAAGAAGCTTTTCCAGACTCCAAATACTGCGAGAAACACATGCATAGAGGCAGAAATCGTTCAAGAAAGCCTGTGGAAATCTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCAATGACCTGTGAAACTCAATCATATCACCACGCTCCTCCTCCTGCTGCTGCTTATCATGAATCCTCAATTCATCCATTTATGTATACTCAATCTTCCTCCTCCAGACCTCCCTGCTCTGATTTCTCTTCAAATAATACAAACCCTCAACTCTTTTTGTACTCAGGGACTCATTCTCAAGCTGATAAAGATTACAGGGATATTAATGGTTCAAGAGAGGGCGTTGGCGTGCAGGCTTTCTTTCCCTCGGTTGCTGAGGTTTATAATAATCAGCAGCCAATAGCGATGGATTCTTACAAAGGATGCTCCCAATTTGTTACTCAAAGCCACCAAATTTACAATTCTAAACAGGCAAGGCAAGAACAAGAGCAACACTGCTTTGTTTTGGGCACAGATTTCAATAAATCGTCAAGATCAGCTATAGCAGAGGAAGAAGAACAAGAACAAGAACAGGATGGTGAAACCCAGAAGCCGCTACTCCATTTCTTTGAGGATTGCCCACCAAAAAACTCGGATTCCTGGCTTGATTTAGCCTCAAATTCAAGTATACAAAATGGAAATTTTATTGGGCTATGA 1062 42.09 MNFAEIPIKKLAPPKNNVPSPSLSFKLSRTMNSSPKTCTTSPFTATQWQELEHQALIFKYMVSGVPIPPDLIFSVKRSLDSSISARLFPHQPIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAFPDSKYCEKHMHRGRNRSRKPVEISSSSSSSSSSSSMTCETQSYHHAPPPAAAYHESSIHPFMYTQSSSSRPPCSDFSSNNTNPQLFLYSGTHSQADKDYRDINGSREGVGVQAFFPSVAEVYNNQQPIAMDSYKGCSQFVTQSHQIYNSKQARQEQEQHCFVLGTDFNKSSRSAIAEEEEQEQEQDGETQKPLLHFFEDCPPKNSDSWLDLASNSSIQNGNFIGL 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9788235 9790063 + CmaCh14G012360.1 Cma14g01236 308219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01236 353 PANTHER - 154 347 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cma14g01236 353 PANTHER - 35 167 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cma14g01236 353 ProSiteProfiles WRC domain profile. 107 151 IPR014977 -
Cma14g01236 353 MobiDBLite consensus disorder prediction 148 170 - -
Cma14g01236 353 ProSiteProfiles QLQ domain profile. 42 77 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma14g01236 353 PANTHER GROWTH-REGULATING FACTOR 5 154 347 - -
Cma14g01236 353 PANTHER GROWTH-REGULATING FACTOR 5 35 167 - -
Cma14g01236 353 SMART QLQ_2 41 77 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma14g01236 353 Pfam WRC 108 150 IPR014977 -
Cma14g01236 353 Pfam QLQ 42 75 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma14g01236 353 MobiDBLite consensus disorder prediction 134 179 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00034 Cma14g01236 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00759 Cma-Chr10:3480515 Cma14g01236 Cma-Chr14:9788235 2.72E-70 dispersed
Cma12g00612 Cma-Chr12:3214305 Cma14g01236 Cma-Chr14:9788235 9.33E-41 dispersed
Cma14g01236 Cma-Chr14:9788235 Cma20g00944 Cma-Chr20:4758947 2.36E-55 dispersed
Cma01g00034 Cma-Chr1:133440 Cma14g01236 Cma-Chr14:9788235 0 wgd
Cma11g00725 Cma-Chr11:3543552 Cma14g01236 Cma-Chr14:9788235 1.09E-66 wgd
Cma14g01236 Cma-Chr14:9788235 Cma05g01420 Cma-Chr5:10540072 5.64E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36274 PF08879 WRC 1.10E-21 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01236 - - csv:101205529 535.798