Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01252 ATGCCGGAAGATATGGCTGGTTTGGCTCCCGAAGGATCTCAATTTGACGCCCGTCAGTATGACACCAAAATGAATGAGTTACTTTCATCGGATGGACAGGATTTCTTCACCTCATATGATGAAGTTTATGATAGTTTTGATTCTATGGGCTTGCAAGAAAACCTCCTCAGAGGCATTTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTTTGCAAAGGGCTTGATGTGATCCAACAAGCGCAGTCTGGAACAGGGAAGACTGCAACCTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTTGTGCAATGCCAGGCTTTGGTCCTGGCACCCACTAGGGAGCTTGCTCAACAGATTGAGAAGGTTATGCGAGCCCTTGGTGATTATCTTGGTGTAAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTACGTGAGGACCAACGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGATATGTTGCGTAGACAATCACTTCGTCCAGACTACATTAAGATGTTTGTGTTGGATGAAGCTGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAGGTTGGTGTCTTCTCTGCTACAATGCCACCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGGATTCTTGTAAAACGTGACGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTCAATGTTGACAAGGAGGACTGGAAGCTTGAGACACTCTGTGATCTTTACGAGACTTTGGCCATCACCCAGAGTGTCATTTTTGTGAATACTCGTCGTAAAGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACAGTATCTGCTACCCATGGTGACATGGACCAGAACACCCGAGACATTATTATGCGTGAGTTCCGTTCAGGTTCATCTAGAGTTCTCATAACCACTGATCTATTGGCCCGTGGTATTGATGTCCAACAGGTTTCTCTTGTTATTAACTTTGATCTGCCGACACAACCCGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGGAAGGGTGTTGCCATCAACTTTGTAACTACGGATGATGAAAGAATGCTTTTCGACATTCAGAAATTCTATAATGTCTTAATTGAAGAACTGCCAGCAAATGTTGCTGATCTCCTGTGA 1254 44.18 MPEDMAGLAPEGSQFDARQYDTKMNELLSSDGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVLIEELPANVADLL 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9927541 9931169 - CmaCh14G012520.1 Cma14g01252 308235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01252 417 Pfam DEAD/DEAH box helicase 69 230 IPR011545 GO:0003676|GO:0005524
Cma14g01252 417 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 256 417 IPR001650 -
Cma14g01252 417 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 75 245 IPR014001 -
Cma14g01252 417 SMART helicmild6 297 378 IPR001650 -
Cma14g01252 417 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 191 199 IPR000629 -
Cma14g01252 417 Gene3D - 34 252 IPR027417 -
Cma14g01252 417 SMART ultradead3 63 260 IPR014001 -
Cma14g01252 417 CDD DEADc_EIF4A 49 246 - -
Cma14g01252 417 Pfam Helicase conserved C-terminal domain 270 378 IPR001650 -
Cma14g01252 417 CDD SF2_C_DEAD 257 387 - -
Cma14g01252 417 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 44 72 IPR014014 GO:0003724
Cma14g01252 417 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 27 417 - -
Cma14g01252 417 Gene3D - 253 417 IPR027417 -
Cma14g01252 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 398 IPR027417 -
Cma14g01252 417 PANTHER RNA HELICASE 27 417 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00052 Cma14g01252 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01252 Cma-Chr14:9927541 Cma14g02025 Cma-Chr14:14149081 2.03E-85 dispersed
Cma05g00423 Cma-Chr5:1908259 Cma14g01252 Cma-Chr14:9927541 0 transposed
Cma01g00052 Cma-Chr1:206398 Cma14g01252 Cma-Chr14:9927541 0 wgd
Cma14g01252 Cma-Chr14:9927541 Cma17g00712 Cma-Chr17:5877920 0 wgd
Cma14g01252 Cma-Chr14:9927541 Cma08g00783 Cma-Chr8:4715727 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01252 K03257 - csv:101223055 811.216