Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g01254 | ATGGCTTACTCATCGCAAATCATCATCCATTCTAAAAAGTTAAGAAGTGTTCCAAAGTTGCTTCGGCAAGCTAGTGCAGTTCGCTGGTTTTCAGAGGATGTGCAGTCCTCCATTGTTAAAGAAGATGGTAAGCAGTGGATCATGCTGACTATTGAAGTTACCGGTGGCTATTTGACAGAAATCTGGAAGATCAAGGGTTGTGGTTACCAGTCTTCTCAAGAAGGGGATTTACAGAACCTTGTCAATTTTAACAACAGACCACACTTTCTCCAATGTAAGAGAGGACTTTCAATGATGACGATGACAAGTATTGGGAATCCGTTTTCTAGCAGTTCCCCGACAAACTCCAAGAGAGGTTTTGCCTCTGATTCAGGTCTTCCCCCACATCAAGAGATTGGAATGCCTTCGCTTTCCCCTACAATGACAGAGGGCAACATTGCAAGGTGGTTGAAAAAAGAGGGAGAGAAAATTTCTCCTGGGGAAGTGCTTTGTGAAGTTGAAACAGATAAAGCAACAGTAGAAATGGAATGCATGGAGGAAGGTTATCTTGCCAAGATAATTTGTGGAGACGGAGAAAAGGAAATTAAAGTTGGTGAGGTAATTGCCATCACTGTTGAAGATGAAGAGGATATAGCAAAGTTTAAAGATTATAAACCCACTTCATCAAATGCCGATGCTGGTGCTGCAGCTGCTAAGGAATCATCTGGCCCTAGCCCACCCAAGAAAGAAGTTGAGGAACCAGTTCGTTCACCTGAGTCAAAGACTGTTAAGCAGAGTCCTCCTGCTCCAGCTGGAGATCGTATTTTTGCTAGTCCTCTGGCAAGAAAGTTAGCAGAAGAAAACAATGTGCCCCTATCAAGTATCAAAGGAACAGGTCCTGAAGGGAGCATTGTGAAGGCTGACATAGAAGATTACATGGCTTCGCGTGGGAAGGAATCAACCACAGCCCCAAAAGCCAAGGATGCAGCAGGTGCACCATTGGATTACAGTGATTTGCCACATACTCAAATAAGAAAGATTACAGCATCACGATTACTATTCTCAAAGCAAACCATTCCTCATTATTATTTAACTGTTGATACATGCGTTGACAAGCTCATGGATTTGAGAAAGCAGTTAAATGCATTACAAGAAGCATCTGGTGGAAAGAGGCTATCTGTTAATGACCTTGTCATTAAGGCTGCTGCCTTGGCTCTAAGGAAAGTACCTCAATGCAACAGTTCATGGACGGACAATTATATTAGACAGTATCACAATGTGAACATTAATGTTGCAGTGCAGACTGATAATGGACTTTTCGTTCCCGTCATCAGGGATGCAGACAAAAAAGGTTTATCTAGTATTTCTGACGAGGTCAAGAAATTAGCTCAGAGAGCGAGAGAGAACAGTTTAAAGCCAGAAGATTATGAGGGAGGCACTTTTACTGTGTCTAACTTGGGAGGTCCATTTGGAATCAAGCAATTTTGTGCCATTATCAACCCGCCGCAGTCGGGCATTCTTGCTGTTGGATCTGCGGAGAAGAGGGTCATACCAGGATCGGGCGCTGAAGAATTCAAGTTTGCTTCCTTCATGTCGGTTACACTGAGCTGTGATCATCGCGTTATTGATGGGGCAATCGGCGCGGATTGGCTCAAAGCATTCAAGGGCTACATCGAGAATCCCGAATCAATTTGTAGTATCCTTGGGATCTCCTTTTGGCTACGCAACCAAAGGAGATTGGAGTTTGCATATAAGACTAAGGGAATAAGGTCAATAAAGGATATAGACGAAGAGGAAATTTTGTATGAAAATGCAAGTTGGGATGGCAGAGATTCACTTCCCAAAAGCACAGATTGCGTGGGATTTGTAAGAATGATGGAAGAGATGTCTCCTGCTGTTTCTTTGACACTTGGTTTGGGCAATTCAAAGTCTGATAGTTCAGAAAGTCCTGGTCATGTCAAATACGCATGCCTAAAGTTGGTGACTGACACGGTAGGTTCGAACGGTAATGGTAGCTTCCATGATTTTAATGGTATAGTTGATGGCTTAACCGTGTCGCGCCCAACGGACAATGGTCAAGGTATAAACACGTTTTGGGGGTTGTTACCGAAGAACGGCACGAATTTGAGTGTAGATAAGAAAGATGCATTGTTATCTACTCTGGATTACCCTGATGAAATGATAGATGATGGATTGTTTGGTATTAATGGTGGTGTCAAAATTGGAGATGTTAGTAATGGTCATATTGTTGCTAAGGCTATCATCTTGGTGGAATCAGGGAATATCCCTACCAATGAACTTATTGTAGCGACAGTAAGCCCGGATTTAGAAGTATCTGCCTCGCCGGAGCTGCACACCGCCCCTGCAGTAGTTTTTGAATCAAAAGGGGGAGATAGCGTTCATAAAGGCATTCGTAGCATCTTCGAACGTGATTGTATTCCGCTTTGGGGGTCGGTATCGATTTGTGGTAGAAGACCAGAAATGGAAGATGCAATTTCTTCTGTTCCTTGTTTTGCAAAGATTCCTATCAAAATGCTTGTAGGGAATGATTTGGTGAATGGAATTGGTCAAAGTTTAACACATATCAACAGCCATTTTTTTGGTGTTTATGATGGACATGGGGGCCCTCAGGTTGCTGATTATTGTCGGGAGCGGATACACGTGGCGTTAGCTGAAGAGATGAGAGATTTTAAACAAGATTTAAATAATGGAAGCAATGGAGAGAATTGGCAGCAGGGTTGGGAGAGAACCTTTAACAATTGCTTTCTTAGAGTTGATGATGAAATAGAAGGAAAAGTTGGTAGAACGGTCGGTGGTAGCGGTAGCGGTGGAGATGTTTTCGATACAAGCTTTGAGCCGGTTGCCCCGGAAACTGTTGGCTCGACTGCTGTTGTTGCGTTGGTCTGTTCATCACACATCATTGTTGCGAACTGTGGTGATTCAAGAGCAGTCCTATGCCGTGGTAAAGAACCCGTGGCTTTATCGGTCGATCATAAACCAAATCGGGAAGACGAGTACGCTCGGATTGAATCGTGTGGAGGCAAGGTCATTCAATGGAACGGACATCGTGTGTTTGGAGTTCTTGCAATGTCTAGATCGATTGGTGATAGATATTTGAAGCCATGGATTATTCCTGATCCGGAAGTTATGTGCTTTGCTCGTGCGAAAGAAGACGAGTGTCTTATTTTAGCGAGCGACGGACTGTGGGATGTGATGACAAATGACGAAGTGTGTGAAGTAGCTCGGAGGCGGATTCTGCTTTGGCACAAGAAACACGGGGCGTCGGCTTCGTGTCTCGGCAATCGGGGCACGGGAGTTGACCCAGCTGCACAAGCTGCTGCAGATTACCTCTCCATGCTTGCTCTCCAAAAGGGAAGCAAAGACAACATCTCTGTGATTGTAGTGGACTTGAAAGCTCAAAGGAAGTTCAAGACCAAATCTTAA | 3423 | 43.97 | MAYSSQIIIHSKKLRSVPKLLRQASAVRWFSEDVQSSIVKEDGKQWIMLTIEVTGGYLTEIWKIKGCGYQSSQEGDLQNLVNFNNRPHFLQCKRGLSMMTMTSIGNPFSSSSPTNSKRGFASDSGLPPHQEIGMPSLSPTMTEGNIARWLKKEGEKISPGEVLCEVETDKATVEMECMEEGYLAKIICGDGEKEIKVGEVIAITVEDEEDIAKFKDYKPTSSNADAGAAAAKESSGPSPPKKEVEEPVRSPESKTVKQSPPAPAGDRIFASPLARKLAEENNVPLSSIKGTGPEGSIVKADIEDYMASRGKESTTAPKAKDAAGAPLDYSDLPHTQIRKITASRLLFSKQTIPHYYLTVDTCVDKLMDLRKQLNALQEASGGKRLSVNDLVIKAAALALRKVPQCNSSWTDNYIRQYHNVNINVAVQTDNGLFVPVIRDADKKGLSSISDEVKKLAQRARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVIPGSGAEEFKFASFMSVTLSCDHRVIDGAIGADWLKAFKGYIENPESICSILGISFWLRNQRRLEFAYKTKGIRSIKDIDEEEILYENASWDGRDSLPKSTDCVGFVRMMEEMSPAVSLTLGLGNSKSDSSESPGHVKYACLKLVTDTVGSNGNGSFHDFNGIVDGLTVSRPTDNGQGINTFWGLLPKNGTNLSVDKKDALLSTLDYPDEMIDDGLFGINGGVKIGDVSNGHIVAKAIILVESGNIPTNELIVATVSPDLEVSASPELHTAPAVVFESKGGDSVHKGIRSIFERDCIPLWGSVSICGRRPEMEDAISSVPCFAKIPIKMLVGNDLVNGIGQSLTHINSHFFGVYDGHGGPQVADYCRERIHVALAEEMRDFKQDLNNGSNGENWQQGWERTFNNCFLRVDDEIEGKVGRTVGGSGSGGDVFDTSFEPVAPETVGSTAVVALVCSSHIIVANCGDSRAVLCRGKEPVALSVDHKPNREDEYARIESCGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMCFARAKEDECLILASDGLWDVMTNDEVCEVARRRILLWHKKHGASASCLGNRGTGVDPAAQAAADYLSMLALQKGSKDNISVIVVDLKAQRKFKTKS | 1140 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 9939265 | 9953873 | + | CmaCh14G012540.1 | Cma14g01254 | 308237 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g01254 | 1140 | ProSiteProfiles | Peripheral subunit-binding (PSBD) domain profile. | 269 | 306 | IPR004167 | GO:0016746 | |
Cma14g01254 | 1140 | SUPERFAMILY | Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 262 | 307 | IPR036625 | GO:0016746 | |
Cma14g01254 | 1140 | SUPERFAMILY | PP2C-like | 801 | 1131 | IPR036457 | - | |
Cma14g01254 | 1140 | Coils | Coil | 359 | 379 | - | - | |
Cma14g01254 | 1140 | TIGRFAM | PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase | 131 | 556 | IPR006257 | GO:0004742|GO:0006090|GO:0045254 | |
Cma14g01254 | 1140 | Pfam | Protein phosphatase 2C | 847 | 1123 | IPR001932 | - | |
Cma14g01254 | 1140 | MobiDBLite | consensus disorder prediction | 107 | 140 | - | - | |
Cma14g01254 | 1140 | ProSitePatterns | PPM-type phosphatase domain signature. | 859 | 867 | IPR000222 | GO:0043169 | |
Cma14g01254 | 1140 | PANTHER | DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 3 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL | 90 | 557 | - | - | |
Cma14g01254 | 1140 | SUPERFAMILY | Single hybrid motif | 129 | 223 | IPR011053 | - | |
Cma14g01254 | 1140 | SUPERFAMILY | CoA-dependent acyltransferases | 328 | 557 | - | - | |
Cma14g01254 | 1140 | CDD | PP2Cc | 810 | 1130 | IPR001932 | - | |
Cma14g01254 | 1140 | Pfam | e3 binding domain | 268 | 303 | IPR004167 | GO:0016746 | |
Cma14g01254 | 1140 | Pfam | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) | 329 | 557 | IPR001078 | GO:0016746 | |
Cma14g01254 | 1140 | Gene3D | - | 124 | 229 | - | - | |
Cma14g01254 | 1140 | ProSitePatterns | 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. | 154 | 183 | IPR003016 | - | |
Cma14g01254 | 1140 | ProSiteProfiles | Biotinyl/lipoyl domain profile. | 129 | 205 | IPR000089 | - | |
Cma14g01254 | 1140 | MobiDBLite | consensus disorder prediction | 238 | 252 | - | - | |
Cma14g01254 | 1140 | Gene3D | - | 314 | 566 | IPR023213 | - | |
Cma14g01254 | 1140 | Gene3D | - | 795 | 1140 | IPR036457 | - | |
Cma14g01254 | 1140 | Gene3D | - | 263 | 313 | IPR036625 | GO:0016746 | |
Cma14g01254 | 1140 | PANTHER | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX | 90 | 557 | - | - | |
Cma14g01254 | 1140 | Pfam | Biotin-requiring enzyme | 131 | 203 | IPR000089 | - | |
Cma14g01254 | 1140 | MobiDBLite | consensus disorder prediction | 107 | 121 | - | - | |
Cma14g01254 | 1140 | MobiDBLite | consensus disorder prediction | 216 | 267 | - | - | |
Cma14g01254 | 1140 | CDD | lipoyl_domain | 130 | 203 | - | - | |
Cma14g01254 | 1140 | ProSiteProfiles | PPM-type phosphatase domain profile. | 808 | 1130 | IPR001932 | - | |
Cma14g01254 | 1140 | SMART | PP2C_4 | 798 | 1128 | IPR001932 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g00055 | Cma14g01254 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00919 | Cma-Chr1:5582542 | Cma14g01254 | Cma-Chr14:9939265 | 7.25E-63 | dispersed | |
Cma01g01120 | Cma-Chr1:8231461 | Cma14g01254 | Cma-Chr14:9939265 | 2.56E-32 | dispersed | |
Cma05g00420 | Cma-Chr5:1893659 | Cma14g01254 | Cma-Chr14:9939265 | 2.46E-163 | dispersed | |
Cma06g01515 | Cma-Chr6:9580529 | Cma14g01254 | Cma-Chr14:9939265 | 7.79E-38 | dispersed | |
Cma09g00960 | Cma-Chr9:4842077 | Cma14g01254 | Cma-Chr14:9939265 | 1.54E-35 | dispersed | |
Cma09g01144 | Cma-Chr9:6494104 | Cma14g01254 | Cma-Chr14:9939265 | 7.27E-64 | dispersed | |
Cma11g00645 | Cma-Chr11:3129652 | Cma14g01254 | Cma-Chr14:9939265 | 7.92E-81 | dispersed | |
Cma12g00652 | Cma-Chr12:3443551 | Cma14g01254 | Cma-Chr14:9939265 | 5.68E-164 | dispersed | |
Cma14g01254 | Cma-Chr14:9939265 | Cma01g00625 | Cma-Chr1:3268907 | 7.72E-68 | dispersed | |
Cma01g00055 | Cma-Chr1:225285 | Cma14g01254 | Cma-Chr14:9939265 | 0 | transposed | |
Cma04g02536 | Cma-Chr4:17372769 | Cma14g01254 | Cma-Chr14:9939265 | 8.59E-27 | transposed | |
Cma01g00054 | Cma-Chr1:217093 | Cma14g01254 | Cma-Chr14:9939265 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g01254 | K00627 | - | csv:101203257 | 920.998 |