Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01254 ATGGCTTACTCATCGCAAATCATCATCCATTCTAAAAAGTTAAGAAGTGTTCCAAAGTTGCTTCGGCAAGCTAGTGCAGTTCGCTGGTTTTCAGAGGATGTGCAGTCCTCCATTGTTAAAGAAGATGGTAAGCAGTGGATCATGCTGACTATTGAAGTTACCGGTGGCTATTTGACAGAAATCTGGAAGATCAAGGGTTGTGGTTACCAGTCTTCTCAAGAAGGGGATTTACAGAACCTTGTCAATTTTAACAACAGACCACACTTTCTCCAATGTAAGAGAGGACTTTCAATGATGACGATGACAAGTATTGGGAATCCGTTTTCTAGCAGTTCCCCGACAAACTCCAAGAGAGGTTTTGCCTCTGATTCAGGTCTTCCCCCACATCAAGAGATTGGAATGCCTTCGCTTTCCCCTACAATGACAGAGGGCAACATTGCAAGGTGGTTGAAAAAAGAGGGAGAGAAAATTTCTCCTGGGGAAGTGCTTTGTGAAGTTGAAACAGATAAAGCAACAGTAGAAATGGAATGCATGGAGGAAGGTTATCTTGCCAAGATAATTTGTGGAGACGGAGAAAAGGAAATTAAAGTTGGTGAGGTAATTGCCATCACTGTTGAAGATGAAGAGGATATAGCAAAGTTTAAAGATTATAAACCCACTTCATCAAATGCCGATGCTGGTGCTGCAGCTGCTAAGGAATCATCTGGCCCTAGCCCACCCAAGAAAGAAGTTGAGGAACCAGTTCGTTCACCTGAGTCAAAGACTGTTAAGCAGAGTCCTCCTGCTCCAGCTGGAGATCGTATTTTTGCTAGTCCTCTGGCAAGAAAGTTAGCAGAAGAAAACAATGTGCCCCTATCAAGTATCAAAGGAACAGGTCCTGAAGGGAGCATTGTGAAGGCTGACATAGAAGATTACATGGCTTCGCGTGGGAAGGAATCAACCACAGCCCCAAAAGCCAAGGATGCAGCAGGTGCACCATTGGATTACAGTGATTTGCCACATACTCAAATAAGAAAGATTACAGCATCACGATTACTATTCTCAAAGCAAACCATTCCTCATTATTATTTAACTGTTGATACATGCGTTGACAAGCTCATGGATTTGAGAAAGCAGTTAAATGCATTACAAGAAGCATCTGGTGGAAAGAGGCTATCTGTTAATGACCTTGTCATTAAGGCTGCTGCCTTGGCTCTAAGGAAAGTACCTCAATGCAACAGTTCATGGACGGACAATTATATTAGACAGTATCACAATGTGAACATTAATGTTGCAGTGCAGACTGATAATGGACTTTTCGTTCCCGTCATCAGGGATGCAGACAAAAAAGGTTTATCTAGTATTTCTGACGAGGTCAAGAAATTAGCTCAGAGAGCGAGAGAGAACAGTTTAAAGCCAGAAGATTATGAGGGAGGCACTTTTACTGTGTCTAACTTGGGAGGTCCATTTGGAATCAAGCAATTTTGTGCCATTATCAACCCGCCGCAGTCGGGCATTCTTGCTGTTGGATCTGCGGAGAAGAGGGTCATACCAGGATCGGGCGCTGAAGAATTCAAGTTTGCTTCCTTCATGTCGGTTACACTGAGCTGTGATCATCGCGTTATTGATGGGGCAATCGGCGCGGATTGGCTCAAAGCATTCAAGGGCTACATCGAGAATCCCGAATCAATTTGTAGTATCCTTGGGATCTCCTTTTGGCTACGCAACCAAAGGAGATTGGAGTTTGCATATAAGACTAAGGGAATAAGGTCAATAAAGGATATAGACGAAGAGGAAATTTTGTATGAAAATGCAAGTTGGGATGGCAGAGATTCACTTCCCAAAAGCACAGATTGCGTGGGATTTGTAAGAATGATGGAAGAGATGTCTCCTGCTGTTTCTTTGACACTTGGTTTGGGCAATTCAAAGTCTGATAGTTCAGAAAGTCCTGGTCATGTCAAATACGCATGCCTAAAGTTGGTGACTGACACGGTAGGTTCGAACGGTAATGGTAGCTTCCATGATTTTAATGGTATAGTTGATGGCTTAACCGTGTCGCGCCCAACGGACAATGGTCAAGGTATAAACACGTTTTGGGGGTTGTTACCGAAGAACGGCACGAATTTGAGTGTAGATAAGAAAGATGCATTGTTATCTACTCTGGATTACCCTGATGAAATGATAGATGATGGATTGTTTGGTATTAATGGTGGTGTCAAAATTGGAGATGTTAGTAATGGTCATATTGTTGCTAAGGCTATCATCTTGGTGGAATCAGGGAATATCCCTACCAATGAACTTATTGTAGCGACAGTAAGCCCGGATTTAGAAGTATCTGCCTCGCCGGAGCTGCACACCGCCCCTGCAGTAGTTTTTGAATCAAAAGGGGGAGATAGCGTTCATAAAGGCATTCGTAGCATCTTCGAACGTGATTGTATTCCGCTTTGGGGGTCGGTATCGATTTGTGGTAGAAGACCAGAAATGGAAGATGCAATTTCTTCTGTTCCTTGTTTTGCAAAGATTCCTATCAAAATGCTTGTAGGGAATGATTTGGTGAATGGAATTGGTCAAAGTTTAACACATATCAACAGCCATTTTTTTGGTGTTTATGATGGACATGGGGGCCCTCAGGTTGCTGATTATTGTCGGGAGCGGATACACGTGGCGTTAGCTGAAGAGATGAGAGATTTTAAACAAGATTTAAATAATGGAAGCAATGGAGAGAATTGGCAGCAGGGTTGGGAGAGAACCTTTAACAATTGCTTTCTTAGAGTTGATGATGAAATAGAAGGAAAAGTTGGTAGAACGGTCGGTGGTAGCGGTAGCGGTGGAGATGTTTTCGATACAAGCTTTGAGCCGGTTGCCCCGGAAACTGTTGGCTCGACTGCTGTTGTTGCGTTGGTCTGTTCATCACACATCATTGTTGCGAACTGTGGTGATTCAAGAGCAGTCCTATGCCGTGGTAAAGAACCCGTGGCTTTATCGGTCGATCATAAACCAAATCGGGAAGACGAGTACGCTCGGATTGAATCGTGTGGAGGCAAGGTCATTCAATGGAACGGACATCGTGTGTTTGGAGTTCTTGCAATGTCTAGATCGATTGGTGATAGATATTTGAAGCCATGGATTATTCCTGATCCGGAAGTTATGTGCTTTGCTCGTGCGAAAGAAGACGAGTGTCTTATTTTAGCGAGCGACGGACTGTGGGATGTGATGACAAATGACGAAGTGTGTGAAGTAGCTCGGAGGCGGATTCTGCTTTGGCACAAGAAACACGGGGCGTCGGCTTCGTGTCTCGGCAATCGGGGCACGGGAGTTGACCCAGCTGCACAAGCTGCTGCAGATTACCTCTCCATGCTTGCTCTCCAAAAGGGAAGCAAAGACAACATCTCTGTGATTGTAGTGGACTTGAAAGCTCAAAGGAAGTTCAAGACCAAATCTTAA 3423 43.97 MAYSSQIIIHSKKLRSVPKLLRQASAVRWFSEDVQSSIVKEDGKQWIMLTIEVTGGYLTEIWKIKGCGYQSSQEGDLQNLVNFNNRPHFLQCKRGLSMMTMTSIGNPFSSSSPTNSKRGFASDSGLPPHQEIGMPSLSPTMTEGNIARWLKKEGEKISPGEVLCEVETDKATVEMECMEEGYLAKIICGDGEKEIKVGEVIAITVEDEEDIAKFKDYKPTSSNADAGAAAAKESSGPSPPKKEVEEPVRSPESKTVKQSPPAPAGDRIFASPLARKLAEENNVPLSSIKGTGPEGSIVKADIEDYMASRGKESTTAPKAKDAAGAPLDYSDLPHTQIRKITASRLLFSKQTIPHYYLTVDTCVDKLMDLRKQLNALQEASGGKRLSVNDLVIKAAALALRKVPQCNSSWTDNYIRQYHNVNINVAVQTDNGLFVPVIRDADKKGLSSISDEVKKLAQRARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVIPGSGAEEFKFASFMSVTLSCDHRVIDGAIGADWLKAFKGYIENPESICSILGISFWLRNQRRLEFAYKTKGIRSIKDIDEEEILYENASWDGRDSLPKSTDCVGFVRMMEEMSPAVSLTLGLGNSKSDSSESPGHVKYACLKLVTDTVGSNGNGSFHDFNGIVDGLTVSRPTDNGQGINTFWGLLPKNGTNLSVDKKDALLSTLDYPDEMIDDGLFGINGGVKIGDVSNGHIVAKAIILVESGNIPTNELIVATVSPDLEVSASPELHTAPAVVFESKGGDSVHKGIRSIFERDCIPLWGSVSICGRRPEMEDAISSVPCFAKIPIKMLVGNDLVNGIGQSLTHINSHFFGVYDGHGGPQVADYCRERIHVALAEEMRDFKQDLNNGSNGENWQQGWERTFNNCFLRVDDEIEGKVGRTVGGSGSGGDVFDTSFEPVAPETVGSTAVVALVCSSHIIVANCGDSRAVLCRGKEPVALSVDHKPNREDEYARIESCGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMCFARAKEDECLILASDGLWDVMTNDEVCEVARRRILLWHKKHGASASCLGNRGTGVDPAAQAAADYLSMLALQKGSKDNISVIVVDLKAQRKFKTKS 1140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9939265 9953873 + CmaCh14G012540.1 Cma14g01254 308237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01254 1140 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 269 306 IPR004167 GO:0016746
Cma14g01254 1140 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 262 307 IPR036625 GO:0016746
Cma14g01254 1140 SUPERFAMILY PP2C-like 801 1131 IPR036457 -
Cma14g01254 1140 Coils Coil 359 379 - -
Cma14g01254 1140 TIGRFAM PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 131 556 IPR006257 GO:0004742|GO:0006090|GO:0045254
Cma14g01254 1140 Pfam Protein phosphatase 2C 847 1123 IPR001932 -
Cma14g01254 1140 MobiDBLite consensus disorder prediction 107 140 - -
Cma14g01254 1140 ProSitePatterns PPM-type phosphatase domain signature. 859 867 IPR000222 GO:0043169
Cma14g01254 1140 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 3 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL 90 557 - -
Cma14g01254 1140 SUPERFAMILY Single hybrid motif 129 223 IPR011053 -
Cma14g01254 1140 SUPERFAMILY CoA-dependent acyltransferases 328 557 - -
Cma14g01254 1140 CDD PP2Cc 810 1130 IPR001932 -
Cma14g01254 1140 Pfam e3 binding domain 268 303 IPR004167 GO:0016746
Cma14g01254 1140 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 329 557 IPR001078 GO:0016746
Cma14g01254 1140 Gene3D - 124 229 - -
Cma14g01254 1140 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 154 183 IPR003016 -
Cma14g01254 1140 ProSiteProfiles Biotinyl/lipoyl domain profile. 129 205 IPR000089 -
Cma14g01254 1140 MobiDBLite consensus disorder prediction 238 252 - -
Cma14g01254 1140 Gene3D - 314 566 IPR023213 -
Cma14g01254 1140 Gene3D - 795 1140 IPR036457 -
Cma14g01254 1140 Gene3D - 263 313 IPR036625 GO:0016746
Cma14g01254 1140 PANTHER DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX 90 557 - -
Cma14g01254 1140 Pfam Biotin-requiring enzyme 131 203 IPR000089 -
Cma14g01254 1140 MobiDBLite consensus disorder prediction 107 121 - -
Cma14g01254 1140 MobiDBLite consensus disorder prediction 216 267 - -
Cma14g01254 1140 CDD lipoyl_domain 130 203 - -
Cma14g01254 1140 ProSiteProfiles PPM-type phosphatase domain profile. 808 1130 IPR001932 -
Cma14g01254 1140 SMART PP2C_4 798 1128 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00055 Cma14g01254 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00919 Cma-Chr1:5582542 Cma14g01254 Cma-Chr14:9939265 7.25E-63 dispersed
Cma01g01120 Cma-Chr1:8231461 Cma14g01254 Cma-Chr14:9939265 2.56E-32 dispersed
Cma05g00420 Cma-Chr5:1893659 Cma14g01254 Cma-Chr14:9939265 2.46E-163 dispersed
Cma06g01515 Cma-Chr6:9580529 Cma14g01254 Cma-Chr14:9939265 7.79E-38 dispersed
Cma09g00960 Cma-Chr9:4842077 Cma14g01254 Cma-Chr14:9939265 1.54E-35 dispersed
Cma09g01144 Cma-Chr9:6494104 Cma14g01254 Cma-Chr14:9939265 7.27E-64 dispersed
Cma11g00645 Cma-Chr11:3129652 Cma14g01254 Cma-Chr14:9939265 7.92E-81 dispersed
Cma12g00652 Cma-Chr12:3443551 Cma14g01254 Cma-Chr14:9939265 5.68E-164 dispersed
Cma14g01254 Cma-Chr14:9939265 Cma01g00625 Cma-Chr1:3268907 7.72E-68 dispersed
Cma01g00055 Cma-Chr1:225285 Cma14g01254 Cma-Chr14:9939265 0 transposed
Cma04g02536 Cma-Chr4:17372769 Cma14g01254 Cma-Chr14:9939265 8.59E-27 transposed
Cma01g00054 Cma-Chr1:217093 Cma14g01254 Cma-Chr14:9939265 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01254 K00627 - csv:101203257 920.998