Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01261 ATGGAGGACACTATGTCCAATTTAACTTCAGCTTCTGGTGAACCCAGTGCCTGCTCCGGCAACCGTTCCGATCAACTTCCGGCCAACTATTCCGGCCAGTATTTTTCTACCCCACCACCACCACCAAAAAAGAAGAGAAACCTCCCCGGAAATCCAGACCCAGATGCCGAAGTGGTAGCTTTATCTCCGAAGACGCTGATGGCGACGAATCGATTCGTATGCGAGATCTGCAGCAAGGGGTTTCAGAGAGATCAGAATCTTCAGCTTCACAAAAGAGGGCACAATTTACCATGGAAGTTGAAGCAAAGAGCTAACAAAGAGGTTATAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGCTGTGTTCATCATGATCCATTAAGGGCTCTTGGGGACTTGACAGGAATCAAGAAGCACTTTTGTAGAAAGCATGGCGAGAAGAAATGGAAATGTGATAAGTGTTCTAAGAGGTATGCTGTTCAATCGGATTGGAAAGCTCATTCCAAGACTTGTGGCACTAGAGAGTACAGATGTGATTGTGGAACCCTTTTCTCGAGGAGGGATAGTTTCATCACCCACAGAGCTTTTTGTGATGCATTGGCAGAGGAAAGTGCAAGAGCCATTACTACATCAAACCCAAATAACAATCAAAACCTTCCCATTTCTTCTTCAATCTCCCACCTAAACTTCCAAAATCCCTTAGATATCAACTCATTCTCTCTCAAAAAAGAGCACCAACAAATCCCAACCACCAACAATTTCAATATTCCCCCATGGATAGGCTGTCCCAGCTCAAGATCATCACCATTACATGATCATCAAAGCCTCATCATGATCAACAATGATCATGATCAAATTATGAACCCTAATAATCCTCTTCATCTAATTCCAAGCTCTTCCCCTTCTCCACATATGTCAGCCACAGCACTTCTTCAAAAAGCAGCTCAAATGGGAGCTACAATGAGCAATAGTAACAACAATGGTAACATGTCCTCCTCCTCCTCCTCACGTGACAATCATCATCAGATTTTGATGGCTGGCAGTGAAGGTGTAGGGCTTCCTCATGCTCTGCCACTCCACACGAACAAATCCAATAATTATAATGATTTTGAAGGGCCTTGTTTTGAATTAGAGAGATTTGGAGGGGGTTTTGAGAAAGATGAGATTTTTAGAGGCAGAAGTGATGAAGGGCTGAGTACAAGAGATTTCTTGGGGCTTAGACCTATTTCTCACACCGAGTTTTTGAATAATATTGCGGCCGTTGGTTATAGTAACTGCATCAATGGCGGCTCTCCTCAAACTCCTCGAACTCAATTTCATAACCAACCCGGCTGGCAAGGTTAG 1344 43.6 MEDTMSNLTSASGEPSACSGNRSDQLPANYSGQYFSTPPPPPKKKRNLPGNPDPDAEVVALSPKTLMATNRFVCEICSKGFQRDQNLQLHKRGHNLPWKLKQRANKEVIRKKVYVCPETSCVHHDPLRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITTSNPNNNQNLPISSSISHLNFQNPLDINSFSLKKEHQQIPTTNNFNIPPWIGCPSSRSSPLHDHQSLIMINNDHDQIMNPNNPLHLIPSSSPSPHMSATALLQKAAQMGATMSNSNNNGNMSSSSSSRDNHHQILMAGSEGVGLPHALPLHTNKSNNYNDFEGPCFELERFGGGFEKDEIFRGRSDEGLSTRDFLGLRPISHTEFLNNIAAVGYSNCINGGSPQTPRTQFHNQPGWQG 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9995680 9998453 + CmaCh14G012610.1 Cma14g01261 308244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01261 447 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 7 343 - -
Cma14g01261 447 MobiDBLite consensus disorder prediction 1 57 - -
Cma14g01261 447 Gene3D Classic Zinc Finger 51 121 - -
Cma14g01261 447 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Cma14g01261 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Cma14g01261 447 SMART c2h2final6 149 169 IPR013087 -
Cma14g01261 447 SMART c2h2final6 72 94 IPR013087 -
Cma14g01261 447 SMART c2h2final6 114 144 IPR013087 -
Cma14g01261 447 Gene3D Classic Zinc Finger 128 207 - -
Cma14g01261 447 SUPERFAMILY beta-beta-alpha zinc fingers 71 169 IPR036236 -
Cma14g01261 447 MobiDBLite consensus disorder prediction 1 33 - -
Cma14g01261 447 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01261 Cma-Chr14:9995680 Cma03g00762 Cma-Chr3:5974951 2.43E-114 dispersed
Cma01g00059 Cma-Chr1:264054 Cma14g01261 Cma-Chr14:9995680 0 wgd
Cma14g01261 Cma-Chr14:9995680 Cma17g00719 Cma-Chr17:5913485 7.02E-120 wgd
Cma14g01261 Cma-Chr14:9995680 Cma08g00775 Cma-Chr8:4677786 5.78E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36278 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01261 K25870 - csv:101204728 565.074