Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g01305 | ATGGGCGCCGACATGTCGGACAATAATAATCGCCTCGCTTTCACCAAAGACTTCTTCTCCTCTCCGGCTCTTTCTCTTACTCTTGCGGGGATTTTTCGCCGGGGCGAGGCGGGGGAGAAAGGGGATGTTGAGATGGAGGAGGTGGATGACGGGAGAGATGATATGACGACGGCGGTGGAGGTTAGTAGCGAGAATTCGGGACCGGTGAGGTCGAGATCGGATGACGATTACGACGGTGGAGGAGTGCATGAAGAGAATGAAGATGGGTGTCATGGAAAGAGAAGGAAGAAGTATCATCGGCATACCAACGAGCAGATCAGAGAAATGGAGGCGCTGTTTAAAGAGTCGCCACATCCGGATGAGAAGCAAAGGCAGCAGCTTGCTAAGCTACTAGGGCTTTCATCAAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAAATTGAGAAACTACGAGCGGCGCTGGGAAAACACCGACATGCAGCGGTGTCTCTGTCATACTCATCGGAGAACGAGCAAGAAACGAACCAAAGCTGCTTAGATTATTACACAGGAATTTTCCGGCTTGAAAAGTCAAGGATCATGGAGAAGGTTCATCAAGCTCTAGAAGAGCTCAAAACAATGGCTGCAGCCGGCGACAGTCTTTGGGTCCTCAGCGTCGAGACCGGAAGAGAGATATTAAACTACGACGAGTACTTAAAAACCTTCCATCTCAACAATGATTCTAACCGTAGTTGGCTCAAAACCCACATCGAGGCCTCTCGTGAGACGGCCCTTGTCTTCATGGAGCCCTCAAGGTTGGTTCAAAGCTTCATGGATGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCGAAGGCAGCTACGGTTGATGTTATTTGTAATGGAGGGATTGCCAATTGGGACGGCGCAGTGCAATTGATGTTTGCAGAGGTACAAATGCTTACACCATTAGTGTCCACAAGAGAGATGTATTTCATCCGGCATTGCAAGCAGCTCGACGCTGAACGATGGGCGATTGTCGATGTTTCAATCGAAAATGTCGAAGATAATAATATCGACGTATCATTGGTGAAATATAGAAAACGTCCTTCTGGCTGCATCATTAAGGATGAATTTAATGGTCATTGTAAGAACAAAGTTCATAACTTGTTCAGAAACTTAATCAACAATGGCGGTGGCTTTGGGGCAAAACGTTGGATGGCAACTCTCCAACTCCAATGCGAACGCCTTGCTTTCTTCATGGCAACCAACATCCCCATGAAAGACTCAACTGGAGTTGCAACACTAGCGGGTAGAAAAAGCACATTAAAGTTGGCACAGAGAATGAGTTCAAGCTTCTCCCAAGCAATAGCAGCTTCAAGTTATCAGACATGGACCAAGGTTGTGGGCAAAACAGGGGAAGACATTAGGGTTTGTTCCAGGAAGAATCCTAGTGACCTTGGTGAACCCATTGGAGCTATTTTGTGTTCAGTTTCTTCTCTATGGCTGCCTGTTTCTCCTCACCTTCTCTTTCATTTCCTGAGAGACCAAGCTTGTCGACATCAGTGGGACGTTATGTTTGGTGGAGATGAAGCTAAGTCGATTGCAAATTTAGCTAAAGGACAAGATCGAGGCAACTCAGTTACCATTCAAACAATTGGATCAAAAGAGAGCAGCAGCAGCATGTGGATCCTCCAAGACAGCTCCACAAACTCGTCGGAATCCATGGTGGTTTACTCCGGAGTAGACGTTACCGGCATGCAGTCGGTGATGACAGGCTGCGATTCCAGCAGCCTCACCATTCTCCCTTCTGGCTTTTCAATTCTCCCCGACGGCGCTGTGTCCAGGCCGCCCCTCCTCATCACCCGACAGAAAGACGACAAGACCGCCGACACCAATGGCGGCGTTCTGCTGACTGCCGCCGTTCAAATCCTCACCGACGCCTCTCCCTCTGCAAAACACACCATGGAATCTGTTGAGATCAAAACCCCATTTGAAGCCTCACCTCCTCCCTCAGCCTGCAACTCCAAGTTTGTTCCTTTTCAATACAAAACGCAGACAACAATGGCTTCCTTAGCAACCTTAGCCGCCGTTCAGCCGGTCACCGTAAAGGGCCTTGGTGGAAGCTCCCTTGCCGGAACTAAGCTCCCTCTCAGGCCCTCTCGCCAGAGCTTCAGACCAAAAAGCTTCAAGGCTGGTGCTGTGGTGGCTAAGTACGGTGACAAAAGTGTTTACTTCGATTTGGAGGATTTGGGCAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACGTTTGCCGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTTCTAGGCGGTGGAGCCACTTTAGCTTATTACAGTGCCACTGCCCCAGATGATGTTCTTCCCATCAAGAAAGGACCTCAACTTCCACCAAAGCTTGGGCCTCGTGGCAAGATCTAA | 2493 | 48.54 | MGADMSDNNNRLAFTKDFFSSPALSLTLAGIFRRGEAGEKGDVEMEEVDDGRDDMTTAVEVSSENSGPVRSRSDDDYDGGGVHEENEDGCHGKRRKKYHRHTNEQIREMEALFKESPHPDEKQRQQLAKLLGLSSRQVKFWFQNRRTQIKIEKLRAALGKHRHAAVSLSYSSENEQETNQSCLDYYTGIFRLEKSRIMEKVHQALEELKTMAAAGDSLWVLSVETGREILNYDEYLKTFHLNNDSNRSWLKTHIEASRETALVFMEPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGGIANWDGAVQLMFAEVQMLTPLVSTREMYFIRHCKQLDAERWAIVDVSIENVEDNNIDVSLVKYRKRPSGCIIKDEFNGHCKNKVHNLFRNLINNGGGFGAKRWMATLQLQCERLAFFMATNIPMKDSTGVATLAGRKSTLKLAQRMSSSFSQAIAASSYQTWTKVVGKTGEDIRVCSRKNPSDLGEPIGAILCSVSSLWLPVSPHLLFHFLRDQACRHQWDVMFGGDEAKSIANLAKGQDRGNSVTIQTIGSKESSSSMWILQDSSTNSSESMVVYSGVDVTGMQSVMTGCDSSSLTILPSGFSILPDGAVSRPPLLITRQKDDKTADTNGGVLLTAAVQILTDASPSAKHTMESVEIKTPFEASPPPSACNSKFVPFQYKTQTTMASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI | 830 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 10283301 | 10293260 | + | CmaCh14G013050.1 | Cma14g01305 | 308288 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g01305 | 830 | CDD | homeodomain | 95 | 153 | IPR001356 | GO:0003677 | |
Cma14g01305 | 830 | Pfam | Homeodomain | 95 | 150 | IPR001356 | GO:0003677 | |
Cma14g01305 | 830 | ProSiteProfiles | START domain profile. | 190 | 417 | IPR002913 | GO:0008289 | |
Cma14g01305 | 830 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 | 151 | 658 | - | - | |
Cma14g01305 | 830 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 | 17 | 150 | - | - | |
Cma14g01305 | 830 | Gene3D | - | 784 | 806 | - | - | |
Cma14g01305 | 830 | ProSitePatterns | 'Homeobox' domain signature. | 127 | 150 | IPR017970 | GO:0000981|GO:0006355 | |
Cma14g01305 | 830 | SUPERFAMILY | Bet v1-like | 193 | 415 | - | - | |
Cma14g01305 | 830 | SUPERFAMILY | Bet v1-like | 458 | 642 | - | - | |
Cma14g01305 | 830 | SMART | HOX_1 | 94 | 156 | IPR001356 | GO:0003677 | |
Cma14g01305 | 830 | MobiDBLite | consensus disorder prediction | 36 | 100 | - | - | |
Cma14g01305 | 830 | MobiDBLite | consensus disorder prediction | 69 | 92 | - | - | |
Cma14g01305 | 830 | ProSiteProfiles | 'Homeobox' domain profile. | 92 | 152 | IPR001356 | GO:0003677 | |
Cma14g01305 | 830 | SMART | START_1 | 199 | 414 | IPR002913 | GO:0008289 | |
Cma14g01305 | 830 | CDD | START_ArGLABRA2_like | 194 | 413 | - | - | |
Cma14g01305 | 830 | SUPERFAMILY | Homeodomain-like | 83 | 150 | IPR009057 | - | |
Cma14g01305 | 830 | Gene3D | - | 82 | 164 | - | - | |
Cma14g01305 | 830 | Pfam | START domain | 203 | 414 | IPR002913 | GO:0008289 | |
Cma14g01305 | 830 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 151 | 658 | IPR042160 | - | |
Cma14g01305 | 830 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 17 | 150 | IPR042160 | - | |
Cma14g01305 | 830 | Pfam | Photosystem I reaction centre subunit VI | 693 | 830 | IPR004928 | GO:0009522|GO:0009538|GO:0015979 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g00107 | Cma14g01305 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma14g01305 | Cma-Chr14:10283301 | Cma08g00920 | Cma-Chr8:5742070 | 3.28E-24 | dispersed | |
Cma01g00107 | Cma-Chr1:495666 | Cma14g01305 | Cma-Chr14:10283301 | 3.13E-81 | transposed | |
Cma01g00106 | Cma-Chr1:490656 | Cma14g01305 | Cma-Chr14:10283301 | 0 | wgd | |
Cma14g01305 | Cma-Chr14:10283301 | Cma08g00707 | Cma-Chr8:4309360 | 2.21E-179 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36283 | PF01852 | START | 6.10E-39 | CL0209 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g01305 | K09338 | - | csv:101221341 | 837.795 |