Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01305 ATGGGCGCCGACATGTCGGACAATAATAATCGCCTCGCTTTCACCAAAGACTTCTTCTCCTCTCCGGCTCTTTCTCTTACTCTTGCGGGGATTTTTCGCCGGGGCGAGGCGGGGGAGAAAGGGGATGTTGAGATGGAGGAGGTGGATGACGGGAGAGATGATATGACGACGGCGGTGGAGGTTAGTAGCGAGAATTCGGGACCGGTGAGGTCGAGATCGGATGACGATTACGACGGTGGAGGAGTGCATGAAGAGAATGAAGATGGGTGTCATGGAAAGAGAAGGAAGAAGTATCATCGGCATACCAACGAGCAGATCAGAGAAATGGAGGCGCTGTTTAAAGAGTCGCCACATCCGGATGAGAAGCAAAGGCAGCAGCTTGCTAAGCTACTAGGGCTTTCATCAAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAAATTGAGAAACTACGAGCGGCGCTGGGAAAACACCGACATGCAGCGGTGTCTCTGTCATACTCATCGGAGAACGAGCAAGAAACGAACCAAAGCTGCTTAGATTATTACACAGGAATTTTCCGGCTTGAAAAGTCAAGGATCATGGAGAAGGTTCATCAAGCTCTAGAAGAGCTCAAAACAATGGCTGCAGCCGGCGACAGTCTTTGGGTCCTCAGCGTCGAGACCGGAAGAGAGATATTAAACTACGACGAGTACTTAAAAACCTTCCATCTCAACAATGATTCTAACCGTAGTTGGCTCAAAACCCACATCGAGGCCTCTCGTGAGACGGCCCTTGTCTTCATGGAGCCCTCAAGGTTGGTTCAAAGCTTCATGGATGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCGAAGGCAGCTACGGTTGATGTTATTTGTAATGGAGGGATTGCCAATTGGGACGGCGCAGTGCAATTGATGTTTGCAGAGGTACAAATGCTTACACCATTAGTGTCCACAAGAGAGATGTATTTCATCCGGCATTGCAAGCAGCTCGACGCTGAACGATGGGCGATTGTCGATGTTTCAATCGAAAATGTCGAAGATAATAATATCGACGTATCATTGGTGAAATATAGAAAACGTCCTTCTGGCTGCATCATTAAGGATGAATTTAATGGTCATTGTAAGAACAAAGTTCATAACTTGTTCAGAAACTTAATCAACAATGGCGGTGGCTTTGGGGCAAAACGTTGGATGGCAACTCTCCAACTCCAATGCGAACGCCTTGCTTTCTTCATGGCAACCAACATCCCCATGAAAGACTCAACTGGAGTTGCAACACTAGCGGGTAGAAAAAGCACATTAAAGTTGGCACAGAGAATGAGTTCAAGCTTCTCCCAAGCAATAGCAGCTTCAAGTTATCAGACATGGACCAAGGTTGTGGGCAAAACAGGGGAAGACATTAGGGTTTGTTCCAGGAAGAATCCTAGTGACCTTGGTGAACCCATTGGAGCTATTTTGTGTTCAGTTTCTTCTCTATGGCTGCCTGTTTCTCCTCACCTTCTCTTTCATTTCCTGAGAGACCAAGCTTGTCGACATCAGTGGGACGTTATGTTTGGTGGAGATGAAGCTAAGTCGATTGCAAATTTAGCTAAAGGACAAGATCGAGGCAACTCAGTTACCATTCAAACAATTGGATCAAAAGAGAGCAGCAGCAGCATGTGGATCCTCCAAGACAGCTCCACAAACTCGTCGGAATCCATGGTGGTTTACTCCGGAGTAGACGTTACCGGCATGCAGTCGGTGATGACAGGCTGCGATTCCAGCAGCCTCACCATTCTCCCTTCTGGCTTTTCAATTCTCCCCGACGGCGCTGTGTCCAGGCCGCCCCTCCTCATCACCCGACAGAAAGACGACAAGACCGCCGACACCAATGGCGGCGTTCTGCTGACTGCCGCCGTTCAAATCCTCACCGACGCCTCTCCCTCTGCAAAACACACCATGGAATCTGTTGAGATCAAAACCCCATTTGAAGCCTCACCTCCTCCCTCAGCCTGCAACTCCAAGTTTGTTCCTTTTCAATACAAAACGCAGACAACAATGGCTTCCTTAGCAACCTTAGCCGCCGTTCAGCCGGTCACCGTAAAGGGCCTTGGTGGAAGCTCCCTTGCCGGAACTAAGCTCCCTCTCAGGCCCTCTCGCCAGAGCTTCAGACCAAAAAGCTTCAAGGCTGGTGCTGTGGTGGCTAAGTACGGTGACAAAAGTGTTTACTTCGATTTGGAGGATTTGGGCAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACGTTTGCCGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTTCTAGGCGGTGGAGCCACTTTAGCTTATTACAGTGCCACTGCCCCAGATGATGTTCTTCCCATCAAGAAAGGACCTCAACTTCCACCAAAGCTTGGGCCTCGTGGCAAGATCTAA 2493 48.54 MGADMSDNNNRLAFTKDFFSSPALSLTLAGIFRRGEAGEKGDVEMEEVDDGRDDMTTAVEVSSENSGPVRSRSDDDYDGGGVHEENEDGCHGKRRKKYHRHTNEQIREMEALFKESPHPDEKQRQQLAKLLGLSSRQVKFWFQNRRTQIKIEKLRAALGKHRHAAVSLSYSSENEQETNQSCLDYYTGIFRLEKSRIMEKVHQALEELKTMAAAGDSLWVLSVETGREILNYDEYLKTFHLNNDSNRSWLKTHIEASRETALVFMEPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGGIANWDGAVQLMFAEVQMLTPLVSTREMYFIRHCKQLDAERWAIVDVSIENVEDNNIDVSLVKYRKRPSGCIIKDEFNGHCKNKVHNLFRNLINNGGGFGAKRWMATLQLQCERLAFFMATNIPMKDSTGVATLAGRKSTLKLAQRMSSSFSQAIAASSYQTWTKVVGKTGEDIRVCSRKNPSDLGEPIGAILCSVSSLWLPVSPHLLFHFLRDQACRHQWDVMFGGDEAKSIANLAKGQDRGNSVTIQTIGSKESSSSMWILQDSSTNSSESMVVYSGVDVTGMQSVMTGCDSSSLTILPSGFSILPDGAVSRPPLLITRQKDDKTADTNGGVLLTAAVQILTDASPSAKHTMESVEIKTPFEASPPPSACNSKFVPFQYKTQTTMASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10283301 10293260 + CmaCh14G013050.1 Cma14g01305 308288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01305 830 CDD homeodomain 95 153 IPR001356 GO:0003677
Cma14g01305 830 Pfam Homeodomain 95 150 IPR001356 GO:0003677
Cma14g01305 830 ProSiteProfiles START domain profile. 190 417 IPR002913 GO:0008289
Cma14g01305 830 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 151 658 - -
Cma14g01305 830 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 17 150 - -
Cma14g01305 830 Gene3D - 784 806 - -
Cma14g01305 830 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Cma14g01305 830 SUPERFAMILY Bet v1-like 193 415 - -
Cma14g01305 830 SUPERFAMILY Bet v1-like 458 642 - -
Cma14g01305 830 SMART HOX_1 94 156 IPR001356 GO:0003677
Cma14g01305 830 MobiDBLite consensus disorder prediction 36 100 - -
Cma14g01305 830 MobiDBLite consensus disorder prediction 69 92 - -
Cma14g01305 830 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Cma14g01305 830 SMART START_1 199 414 IPR002913 GO:0008289
Cma14g01305 830 CDD START_ArGLABRA2_like 194 413 - -
Cma14g01305 830 SUPERFAMILY Homeodomain-like 83 150 IPR009057 -
Cma14g01305 830 Gene3D - 82 164 - -
Cma14g01305 830 Pfam START domain 203 414 IPR002913 GO:0008289
Cma14g01305 830 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 151 658 IPR042160 -
Cma14g01305 830 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 150 IPR042160 -
Cma14g01305 830 Pfam Photosystem I reaction centre subunit VI 693 830 IPR004928 GO:0009522|GO:0009538|GO:0015979
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00107 Cma14g01305 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01305 Cma-Chr14:10283301 Cma08g00920 Cma-Chr8:5742070 3.28E-24 dispersed
Cma01g00107 Cma-Chr1:495666 Cma14g01305 Cma-Chr14:10283301 3.13E-81 transposed
Cma01g00106 Cma-Chr1:490656 Cma14g01305 Cma-Chr14:10283301 0 wgd
Cma14g01305 Cma-Chr14:10283301 Cma08g00707 Cma-Chr8:4309360 2.21E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36283 PF01852 START 6.10E-39 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01305 K09338 - csv:101221341 837.795