Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma14g01309 | ATGGATTTCTGGCCGGAATTTCTCGCTAACAGTTGGGGGAAAGAGTTCATAGCCGGCGGAATCGGCGGCATCGCCGGCATCGTCTCCGGCTACCCACTCGACACCCTTCGCATCCGACAGCAACACTCCACCTCTGGTTCCGCCATTAGCGTCCTCCGTAACATCATGTCCAACGGCGGCCCAGCTGCCCTCTACAGAGGAATGGGCGCTCCACTCGCTTCCGTCACTTTCCAGAACGCAATTGTTTTCCAAACAAACGCGGTGCTCTGCCGAGCGTTCGATCCGGCGGTAACGGACAACCGTCCACCGTCGTACAAGGCAGTAGCATTAGGCGGATTCGGCACCGGAGCATTACAGAGCCTAATTCTAACACCGGTGGAGCTCGTTAAGATCCGCCTTCAATTACAGGATCTGGGTTCATCGAGCCACTCAGATCTGGGTTCATCTCGGCCCGGGCCGATGCAGGTTGCGAAGAACATATTCAAAACCGAAGGCTACAAAGGGCTTTACAGAGGCTTAACAATCACAATGCTAAGAGACGCTCCATCCCATTGTTTTTACTTCTGGACATACGAATTCATGAGAGAAAAGCTTCATCCCGGTTGCAGGGAGTCCGGGCAAGAGACATTGAGAACGATGCTCGTCGCCGGCGGTTTAGCCGGCGTGGCCAGTTGGGTGTGTTGTTACCCACTGGATGTGGTTAAAACCAGACTCCAAGCTCAATCGAAAATGTCGTTTCAAAAGTACAGTGGAATTGTGGACTGTTTCTATAAGAGCGTGAAAGAAGAAGGGTACAGTGTGTTATGGCGGGGATTGGGAACCGCCATTGCAAGAGCTTTTGTAGTGAATGGAGCCATTTTTTCTGCTTATGAGCTGAGCTTGAGATGTCTGTCCAACAATGGAGGATTTCATGCTGAAAACACCATTTAA | 930 | 51.61 | MDFWPEFLANSWGKEFIAGGIGGIAGIVSGYPLDTLRIRQQHSTSGSAISVLRNIMSNGGPAALYRGMGAPLASVTFQNAIVFQTNAVLCRAFDPAVTDNRPPSYKAVALGGFGTGALQSLILTPVELVKIRLQLQDLGSSSHSDLGSSRPGPMQVAKNIFKTEGYKGLYRGLTITMLRDAPSHCFYFWTYEFMREKLHPGCRESGQETLRTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSKMSFQKYSGIVDCFYKSVKEEGYSVLWRGLGTAIARAFVVNGAIFSAYELSLRCLSNNGGFHAENTI | 309 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 10305977 | 10307533 | - | CmaCh14G013090.1 | Cma14g01309 | 308292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma14g01309 | 309 | Pfam | Mitochondrial carrier protein | 212 | 299 | IPR018108 | - | |
| Cma14g01309 | 309 | Pfam | Mitochondrial carrier protein | 109 | 198 | IPR018108 | - | |
| Cma14g01309 | 309 | Pfam | Mitochondrial carrier protein | 11 | 91 | IPR018108 | - | |
| Cma14g01309 | 309 | PANTHER | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED | 1 | 298 | - | - | |
| Cma14g01309 | 309 | PANTHER | CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN | 1 | 298 | - | - | |
| Cma14g01309 | 309 | Gene3D | Mitochondrial carrier domain | 12 | 304 | IPR023395 | - | |
| Cma14g01309 | 309 | SUPERFAMILY | Mitochondrial carrier | 11 | 291 | IPR023395 | - | |
| Cma14g01309 | 309 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 208 | 296 | IPR018108 | - | |
| Cma14g01309 | 309 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 103 | 197 | IPR018108 | - | |
| Cma14g01309 | 309 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 10 | 92 | IPR018108 | - | |
| Cma14g01309 | 309 | PRINTS | Mitochondrial carrier protein signature | 15 | 28 | IPR002067 | GO:0055085 | |
| Cma14g01309 | 309 | PRINTS | Mitochondrial carrier protein signature | 118 | 136 | IPR002067 | GO:0055085 | |
| Cma14g01309 | 309 | PRINTS | Mitochondrial carrier protein signature | 170 | 188 | IPR002067 | GO:0055085 | |
| Cma14g01309 | 309 | PRINTS | Mitochondrial carrier protein signature | 217 | 239 | IPR002067 | GO:0055085 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma08g00693 | Cma14g01309 | CCT | |
| Cma14g01309 | Cma17g00803 | CCT | |
| Cma01g00111 | Cma14g01309 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma14g01309 | Cma-Chr14:10305977 | Cma16g01153 | Cma-Chr16:8867734 | 3.42E-50 | dispersed | |
| Cma01g00111 | Cma-Chr1:504236 | Cma14g01309 | Cma-Chr14:10305977 | 0 | wgd | |
| Cma14g01309 | Cma-Chr14:10305977 | Cma17g00803 | Cma-Chr17:6339761 | 5.94E-144 | wgd | |
| Cma14g01309 | Cma-Chr14:10305977 | Cma08g00693 | Cma-Chr8:4261140 | 3.93E-149 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma14g01309 | K15109 | - | csv:101222749 | 577.015 |