Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g01388 | ATGGACTTCAAGAACTCCAACACCAACTCCCCTTCCCCATCCAAGCCAAGAAGAAAGCACCATGACCAACACCCACAGCCACACCCACAAGAGCCCACAAGGTTTCTAGGGGTTCGACGACGCCCATGGGGCCGATACGCCGCTGAAATTCGAGACCCATCCACCAAAGAAAGGCATTGGCTTGGCACCTTTGACACTGCCGAGGAGGCTGCCTTGGCCTACGACCGTGCCGCTCGCTCCATGCGTGGCTCCAAAGCTCGCACCAACTTTGTCTATTCCGACATGCCTCATGGCTCATCCGTCACCACCATTATCTCCCCTGATGACTCCCAACTCTTCCCTCCAACCCCAACCCCAACCCCAACCTCCCTCCCCCAAACCCAACCCAACCACCTTTGCTTCACCCTTCACGACGACCCGTTCACTGCCACCTCATTCCCCGGAAACGACTGGCTCCCCGACTCCGACTCTTATCAGCCCGTCACCGCCTTCATGGACACCGGTATCCCACACCATGACACCGAGCTCCCCCCGCTTCCACCGGACGCTTCTTCTTCCTATACCGATTGTGCCACCATGATTGATTGGTCCTCTTCCTCTTCTTCCTCTTTTATCGGCTTCGATTCGAACGCACCTTTGCCGCCCTTCCCCGACACCAATACCGACTCGTTCGGATTCGGTTCATCGTCCAATTACTTCTACTGA | 705 | 56.6 | MDFKNSNTNSPSPSKPRRKHHDQHPQPHPQEPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTTIISPDDSQLFPPTPTPTPTSLPQTQPNHLCFTLHDDPFTATSFPGNDWLPDSDSYQPVTAFMDTGIPHHDTELPPLPPDASSSYTDCATMIDWSSSSSSSFIGFDSNAPLPPFPDTNTDSFGFGSSSNYFY | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 10720830 | 10721534 | - | CmaCh14G013880.1 | Cma14g01388 | 308371 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g01388 | 234 | PRINTS | Ethylene responsive element binding protein signature | 35 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Cma14g01388 | 234 | PRINTS | Ethylene responsive element binding protein signature | 57 | 73 | IPR001471 | GO:0003700|GO:0006355 | |
Cma14g01388 | 234 | SUPERFAMILY | DNA-binding domain | 35 | 92 | IPR016177 | GO:0003677 | |
Cma14g01388 | 234 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cma14g01388 | 234 | Gene3D | AP2/ERF domain | 33 | 92 | IPR036955 | GO:0003700|GO:0006355 | |
Cma14g01388 | 234 | ProSiteProfiles | AP2/ERF domain profile. | 34 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Cma14g01388 | 234 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 2 | 207 | - | - | |
Cma14g01388 | 234 | CDD | AP2 | 33 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Cma14g01388 | 234 | SMART | rav1_2 | 34 | 97 | IPR001471 | GO:0003700|GO:0006355 | |
Cma14g01388 | 234 | Pfam | AP2 domain | 35 | 83 | IPR001471 | GO:0003700|GO:0006355 | |
Cma14g01388 | 234 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP-LIKE | 2 | 207 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01770 | Cma-Chr4:8896715 | Cma14g01388 | Cma-Chr14:10720830 | 6.63E-27 | dispersed | |
Cma04g02229 | Cma-Chr4:15533941 | Cma14g01388 | Cma-Chr14:10720830 | 9.71E-39 | dispersed | |
Cma06g01482 | Cma-Chr6:9427450 | Cma14g01388 | Cma-Chr14:10720830 | 5.34E-36 | dispersed | |
Cma14g01388 | Cma-Chr14:10720830 | Cma18g00764 | Cma-Chr18:6809165 | 1.42E-28 | dispersed | |
Cma14g01388 | Cma-Chr14:10720830 | Cma05g00044 | Cma-Chr5:182775 | 4.68E-29 | transposed | |
Cma14g01388 | Cma-Chr14:10720830 | Cma12g00034 | Cma-Chr12:130502 | 2.36E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36292 | PF00847 | AP2 | 1.40E-13 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g01388 | K09286 | - | csv:101205393 | 315.079 |