Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01388 ATGGACTTCAAGAACTCCAACACCAACTCCCCTTCCCCATCCAAGCCAAGAAGAAAGCACCATGACCAACACCCACAGCCACACCCACAAGAGCCCACAAGGTTTCTAGGGGTTCGACGACGCCCATGGGGCCGATACGCCGCTGAAATTCGAGACCCATCCACCAAAGAAAGGCATTGGCTTGGCACCTTTGACACTGCCGAGGAGGCTGCCTTGGCCTACGACCGTGCCGCTCGCTCCATGCGTGGCTCCAAAGCTCGCACCAACTTTGTCTATTCCGACATGCCTCATGGCTCATCCGTCACCACCATTATCTCCCCTGATGACTCCCAACTCTTCCCTCCAACCCCAACCCCAACCCCAACCTCCCTCCCCCAAACCCAACCCAACCACCTTTGCTTCACCCTTCACGACGACCCGTTCACTGCCACCTCATTCCCCGGAAACGACTGGCTCCCCGACTCCGACTCTTATCAGCCCGTCACCGCCTTCATGGACACCGGTATCCCACACCATGACACCGAGCTCCCCCCGCTTCCACCGGACGCTTCTTCTTCCTATACCGATTGTGCCACCATGATTGATTGGTCCTCTTCCTCTTCTTCCTCTTTTATCGGCTTCGATTCGAACGCACCTTTGCCGCCCTTCCCCGACACCAATACCGACTCGTTCGGATTCGGTTCATCGTCCAATTACTTCTACTGA 705 56.6 MDFKNSNTNSPSPSKPRRKHHDQHPQPHPQEPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTTIISPDDSQLFPPTPTPTPTSLPQTQPNHLCFTLHDDPFTATSFPGNDWLPDSDSYQPVTAFMDTGIPHHDTELPPLPPDASSSYTDCATMIDWSSSSSSSFIGFDSNAPLPPFPDTNTDSFGFGSSSNYFY 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10720830 10721534 - CmaCh14G013880.1 Cma14g01388 308371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01388 234 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Cma14g01388 234 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Cma14g01388 234 SUPERFAMILY DNA-binding domain 35 92 IPR016177 GO:0003677
Cma14g01388 234 MobiDBLite consensus disorder prediction 1 41 - -
Cma14g01388 234 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Cma14g01388 234 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Cma14g01388 234 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 207 - -
Cma14g01388 234 CDD AP2 33 90 IPR001471 GO:0003700|GO:0006355
Cma14g01388 234 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Cma14g01388 234 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Cma14g01388 234 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP-LIKE 2 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01770 Cma-Chr4:8896715 Cma14g01388 Cma-Chr14:10720830 6.63E-27 dispersed
Cma04g02229 Cma-Chr4:15533941 Cma14g01388 Cma-Chr14:10720830 9.71E-39 dispersed
Cma06g01482 Cma-Chr6:9427450 Cma14g01388 Cma-Chr14:10720830 5.34E-36 dispersed
Cma14g01388 Cma-Chr14:10720830 Cma18g00764 Cma-Chr18:6809165 1.42E-28 dispersed
Cma14g01388 Cma-Chr14:10720830 Cma05g00044 Cma-Chr5:182775 4.68E-29 transposed
Cma14g01388 Cma-Chr14:10720830 Cma12g00034 Cma-Chr12:130502 2.36E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36292 PF00847 AP2 1.40E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01388 K09286 - csv:101205393 315.079