Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01419 ATGGAAAACCCATTTCCATCCAAGGAGGAAGGGATGGGGTATTGGGGGCCTTCCAGAACTCAGGCCGATGCTCTGACTTTTACTGACGCTGGAATGAGGATTCCTAGTCCTGAAGATGTGCTCCACAGCATCTCAGAGCTGATGAGTTTTGATTCTTATGCAGGATGGGGCAACAACTGTGCAGTAATGGATCCGGTTTTCACCTCTTGTGGAATTTCGTCGATTCCACCAACGAGTACTTGCCCTTCTATGGAGGGCTCAACTTTCCCAGAAGGGGGGAGCCATGAAATACTTACTTTGAATGAACTTGGTGGAGCTTCCATTTCCGTGGTGAATTCTTTTACCTGTGGAGATGAGGTTATGTTTCAGCAGCCAGATACTGAATTTGGGGTATCTGATGTTTCGGACAACACAAATGAATCAGGTTCGAATTCAAATAACGTCCAAGACATGGATAGTTGTCTGATTTCTAGGCCGATTGGTTGGTCACTTGATGAGAGAATGCTGAGGGCATTGTCCTTGTTTAAAGAGTCTTCACCCGGAGGTATTTTGGCTCAAGTCTGGGTGCCTATGAAGCATGGAAACCAATTCTTCCTGAGCACCACTGATCAGCCGTATTTGCTCGATCAAATGCTCACTGGGTACCGTGAAGTGTCGAGGTGGTATACATTCTCTGCGGAAGGGAAACTGGGTTCTCTCCTTGGACTTCCTGGTCGTGTTTTCAATTCCAAAATTCCAGAATGGACATCAAATGTTAGATATTACAGTGACGCTGAGTATCTGAGAATGGAACACGCAATTGGTCACGAGGTTTATGGATCAATTGCCTTACCAATATTCAGTAATGAACTTGAAAGGTCATGCTGTGCCGTACTTGAAGTTGTTACGACAAAGGAGAAGCCCAATTTTGATGCAGAGATTGACATTGTTTCCCGAGCGCTGGAGATTGTTAGCTTGAGAACTATTGCACCGCCTCGACTATATCCTCAGTGTTTGAAGCAGAACCAGAGATCTGTATTAGCAGAGATAACAGATGTGCTACGCGCTGTATGTCATGCACATAGGCTACCTCTGGCACTCACCTGGATTCCTTGCTGTTATACCATGCAAGCTGTTGATGAGGCTGCTAGAGTTCGTGTGAAGGAGAACGACGTCAGCCCAAAGGGGAAATCTGTATTATGCATTGAGGAAACAGCATGTTATGTGAATGACAAAGCAACTCAAGGATTTGTGCATGCGTGTACGGAACATCATCTTGAAGAAGGACAAGGGATAGTTGGGAAAGCTCTTCAATCTAATCATCCCTTCTTTTATCCTGACGTGAAGGCATATAATATTAATGAGTATCCGCTGGTCCATCATGCACGCAAGTTTGGTTTGAATGCTGCTGTTGCAATCAGGCTGAGAAGCACATACACTGGTGCTGATGATTATATACTCGAATTCTTTCTACCTGTCAATATGAAAGGAAGCTCAGAACAGCAACTTTTATTGAACAATCTCTCTGGTACCATGCAAAGAATGTGCCGGAGCTTGAGAACAGTTTCAAAGGACGAATTATTGGGGGCCAAGGATCCTGATGCTGGATTCCAGAGTGGAATGGTCGGTAAGTCTGCAACTACGTCCAGGAGAAACTCACAGTCTACGGTTACAGACAGTGAAACAAGGGTATCTAACTCGATAAATGATGGAACTAAAGCGGAATGCCCTAAGAAGCAGCAGACGACTAATGGTACACGGAGGCAGGCGGACAAAAAACGTAGCACAGCTGAAAAAAACGTGAGCTTTAGTGTTCTTCAGCAATATTTTTCTGGGAGTCTCAAGGATGCAGCGAAGAGCATTGGTGTTTGCCCAACAACCCTGAAAAGAATATGCAGACAACATGGGATTCTGAGGTGGCCGTCCCGTAAAATAAACAAGGTAAACCGTTCGCTAGGGAAAATACAGACGGTTCTCGATTCTGTGAAGGGGGTGGAGTGTAGACTGAAGTTTGATCCAACGACAGGGGGTCTTATGGCAGCCGGTTCTCTTATTCCAGAGCTCAATGGGCAGAACAGTCCTCTCTTCTCTGATAATAATCCATCTATAATAAACCTCAAGCCGTTACCTCGGGATGTAAATTCAGTTCCTTCTATCCCTTTCGATAGTCAGAACCCCACTGTGAAGTTGGAAATGGATGACCAAAGAAACTCGTCGAGGAGTGTTCTTATTCCTGAGAAGGAACCCAGTGTTTGCCAGCTTGATTGTGGTGAAGGTTCAAAGTCCACTGGGTTAGATGCTGCATCATGCCAGCTTTCTGGCCTGGATGTGATGGATTGGGATGTCCCAGGGAATGCCGCAGGTTGTATTACTGCTAAAAAAGGCAACGGATTGGATTTTGTTGAGAATAATTTGAGGTCATGCTCTTTTGGGGCTGCCAACGGGGTGGGAACCATGTGGGAAGGCAGCGATGGAATGAATGAACATTACCAGCCAACTACTTCAAGCATGACGGACTCATCAAATGGCTCTGGCTTATTGATCCACGGGAGTTCGTCCAGCGGTCAGAGCGTCGAGGAGAGGAAGCATTTGCAAGAAAAAACTAGCTGTGTTGACAGTGATTCAAAGATCGTTGTAAAAGCTTCATACAAAGAAGACACGGTTCGATTCAAGTTTGATCCGTCTTTAGGATATCTCCAGCTCTACGAAGAAGTTGGCAAGAGATTCAAGTTAAACCAGGGGACATTCCAGCTCAAATACCTCGACGACGAAAAAGAATGGGTAATGCTAGTTAGCAATTCAGACATGCAGGAATGTCTTGAGGTGATGGACGAGATCGGCACCAGAAACGTGAAGTTTCTCGTACGCGATATCACGTGTGCCGTGGGCAGTTCTGGCAGCAGTAGCTGCTACCTATCTGGAGGTTCATGA 2910 45.64 MENPFPSKEEGMGYWGPSRTQADALTFTDAGMRIPSPEDVLHSISELMSFDSYAGWGNNCAVMDPVFTSCGISSIPPTSTCPSMEGSTFPEGGSHEILTLNELGGASISVVNSFTCGDEVMFQQPDTEFGVSDVSDNTNESGSNSNNVQDMDSCLISRPIGWSLDERMLRALSLFKESSPGGILAQVWVPMKHGNQFFLSTTDQPYLLDQMLTGYREVSRWYTFSAEGKLGSLLGLPGRVFNSKIPEWTSNVRYYSDAEYLRMEHAIGHEVYGSIALPIFSNELERSCCAVLEVVTTKEKPNFDAEIDIVSRALEIVSLRTIAPPRLYPQCLKQNQRSVLAEITDVLRAVCHAHRLPLALTWIPCCYTMQAVDEAARVRVKENDVSPKGKSVLCIEETACYVNDKATQGFVHACTEHHLEEGQGIVGKALQSNHPFFYPDVKAYNINEYPLVHHARKFGLNAAVAIRLRSTYTGADDYILEFFLPVNMKGSSEQQLLLNNLSGTMQRMCRSLRTVSKDELLGAKDPDAGFQSGMVGKSATTSRRNSQSTVTDSETRVSNSINDGTKAECPKKQQTTNGTRRQADKKRSTAEKNVSFSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKVNRSLGKIQTVLDSVKGVECRLKFDPTTGGLMAAGSLIPELNGQNSPLFSDNNPSIINLKPLPRDVNSVPSIPFDSQNPTVKLEMDDQRNSSRSVLIPEKEPSVCQLDCGEGSKSTGLDAASCQLSGLDVMDWDVPGNAAGCITAKKGNGLDFVENNLRSCSFGAANGVGTMWEGSDGMNEHYQPTTSSMTDSSNGSGLLIHGSSSSGQSVEERKHLQEKTSCVDSDSKIVVKASYKEDTVRFKFDPSLGYLQLYEEVGKRFKLNQGTFQLKYLDDEKEWVMLVSNSDMQECLEVMDEIGTRNVKFLVRDITCAVGSSGSSSCYLSGGS 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10918230 10924329 + CmaCh14G014190.1 Cma14g01419 308402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01419 969 PANTHER PROTEIN NLP8 9 966 IPR045012 GO:0003700
Cma14g01419 969 Pfam PB1 domain 871 949 IPR000270 GO:0005515
Cma14g01419 969 MobiDBLite consensus disorder prediction 534 577 - -
Cma14g01419 969 MobiDBLite consensus disorder prediction 526 590 - -
Cma14g01419 969 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 9 966 - -
Cma14g01419 969 SUPERFAMILY CAD & PB1 domains 861 953 - -
Cma14g01419 969 SMART PB1_new 869 951 IPR000270 GO:0005515
Cma14g01419 969 Pfam RWP-RK domain 593 641 IPR003035 -
Cma14g01419 969 ProSiteProfiles RWP-RK domain profile. 575 661 IPR003035 -
Cma14g01419 969 Gene3D - 866 951 - -
Cma14g01419 969 ProSiteProfiles PB1 domain profile. 869 951 IPR000270 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01419 - - - csv:101222520 1596.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01701 Cma14g01419 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01419 Cma-Chr14:10918230 Cma16g00528 Cma-Chr16:2695380 3.22E-21 dispersed
Cma14g01419 Cma-Chr14:10918230 Cma06g01701 Cma-Chr6:10452238 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1280 . . . . . Bpe14g01069 . . . . Cma06g01701 Cma14g01419 . Car14g01252 Sed02g0966 . Cpe03g01194 Bhi01g03703 Tan10g1398 Cmetu07g0313 . Hepe05g1115 . Lcy11g1016 . . . . . . . . . . Cone11ag0645 . . . Cme07g01966 Blo02g00452 Blo07g00121 Bda11g00482 Bda13g00247 . . Bma02g00962 Bma06g01446 . . Cmo14g01455 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006292 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36294 PF00564 PB1 3.10E-17 CL0072 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01419 Cma_Chr14 FPKM 15.512444 16.131281 15.575274 16.27647 14.24395 13.18175 13.114374 13.820048 12.36013 12.565585