Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01427 ATGGGGATGCCAACTCGGCAGCTATTTAAACCGAAGGTTCAAGATTTCGTTATCCGTTTCCCAACTGTGCCAACACCTTGCTCTCAATTTTCCATGGCGTCTTCCGCCTCCTCAATGTTGCTCCCGCTTGGTTCAGCTTCTGGAATACACCAAAGAATTTCACGTGATAAAATACGACCTCTTGTTGTGCGCTGCTTGAATGCCAATATCAATGCAAAAGAATGGCGGATGAAAGAGTATGGGAAGGAACTCAATTTGACTAGAAGAAGAGAAATGATTGGTTTAGTTTGTGGAATGTCAAGTCTCGTTATACATGTTCTAAATGCCAAGGCAGCTGGCCTGCCTCCAGAAGACAAGCCAAGATTATGTGACGATGCCTGTGAGAAAGAACTTGAAAATGTTCCTATGATCACGACTGAGTCTGGTTTGCAGTACAAGGACATCAAAGTTGGTGGAGGCCCCAGTCCACCTGTTGGATTTCAGGTGGCCGCAAATTATGTTGCAATGGTTCCATCTGGACAAATTTTTGACAGTTCACTTGAGAAGAAGCAGCTTTACATTTTTCGCGTTGGATCTGGTCAGGTGATCAAAGGACTTGATGAAGGGATTTTAAGCATGAAAGTTGGTGGGAAGCGTCGACTGTACATTCCTGGATCTTTGGCATTCCCAAAAGGCCTAACATCAGCTCCAGGAAGGCCAAGGGTAGCTCCAAGTAGTCCTGTGGTATTTGACGTCAGTCTGGAATACATACCAGGCCTTGAAGATGATGAAGAGTGA 777 45.05 MGMPTRQLFKPKVQDFVIRFPTVPTPCSQFSMASSASSMLLPLGSASGIHQRISRDKIRPLVVRCLNANINAKEWRMKEYGKELNLTRRREMIGLVCGMSSLVIHVLNAKAAGLPPEDKPRLCDDACEKELENVPMITTESGLQYKDIKVGGGPSPPVGFQVAANYVAMVPSGQIFDSSLEKKQLYIFRVGSGQVIKGLDEGILSMKVGGKRRLYIPGSLAFPKGLTSAPGRPRVAPSSPVVFDVSLEYIPGLEDDEE 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10950509 10960239 - CmaCh14G014270.1 Cma14g01427 308410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01427 258 Gene3D - 132 249 IPR046357 GO:0003755
Cma14g01427 258 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-3, CHLOROPLASTIC 36 258 - -
Cma14g01427 258 SUPERFAMILY FKBP-like 125 247 - -
Cma14g01427 258 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 159 247 IPR001179 GO:0003755
Cma14g01427 258 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 159 251 IPR001179 GO:0003755
Cma14g01427 258 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 36 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01427 K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] - csv:101220326 407.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01427 Cma-Chr14:10950509 Cma07g00526 Cma-Chr7:2284143 7.80E-14 dispersed
Cma14g01427 Cma-Chr14:10950509 Cma14g01395 Cma-Chr14:10769116 3.06E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1287 . . Bda03g00972 . Bpe04g00898 . . . . . . Cma14g01427 . Car14g01257 Sed12g0549 . Cpe03g01199 Bhi01g03696 Tan10g1419 Cmetu07g0756 . . . . . . . . . . . . . . Cone11ag0649 . . . Cme07g01953 . . . . . . . . . . Cmo14g01463 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009069 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01427 Cma_Chr14 FPKM 0.0 0.0 4.409684 5.535519 36.457047 38.657356 33.874084 10.08151 8.772151 10.14807