Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01428 ATGGCTGTCCAAACCCACGTTTATACCGGATTAGCTTTGGCTTCAACTCCTTCTTCTTCGTTTCAACCCTCTTCTTCCAAGCCCGCTACCCTCTGTGCCGCCACAAAGCTCTTAAGAACGTCCTTCCTTAATGGCGGAGGGAACATTTTACAAATTACAGAGATGAAATCTTTGCATTTTGATCAATCCCATGGTTGTAGACGTGGAGGTGCTCTTGGTGCTCGCATGAACCTGTTTGACCGTTTTGCAAGGGTCGTAAAGTCATATGCAAATGCACTTGTAAGTTCCTTTGAGGATCCTGAGAAAATCCTGGAGCAGACAGTGCTTGAAATGAATGATGATTTGACAAAGATGCGTCAAGCCACAGCACAGGTACTAGCTTCTCAGAAGCGCTTGGAAAACAAGTACAAATCTGCACAGCAAGCTGCTGATGATTGGTATCGAAAGGCACAATTTGCTCTCCAAAAGGGAGATGATGATCTTGCTCGGGAAGCTTTAAAGAGGCGCAAATCATTTGCTGATAATGCAAATTCTTTGAAAGCTCAACTTGATCAGCAGAAGAATGTTGTGGAAAATCTTGTTTCTAATACACGGCTATTAGAGAGCAAGATACAAGAGGCAAGATCAAAGAAAGACACACTGAAAGCACGTGCGCAGTCTGCGAAGACTGCAACCAAAGTGAGTGAAATGTTGGGGAATGTTAACACAAGCAGTGCTCTTTCTGCTTTCGAGAAGATGGAAGAGAAAGTTATGGCAATGGAGTCTCAAGCAGAAGCTCTTGGACAGTTAACTGCTGACGATCTTGAAGGAAAGTTTGCTCTGTTGGAGGGCTCATCAGTCGATGATGAGTTAGCGAACTTGAAGAAAGAGTTATCTGGAAGCTCAAAGAAAGGAGAACTTCCACCAGGAAGAACTGTTTCTGGCAGCGCGTTTCCGGTTCGTGATGCTGAGATCGAGTCGGAACTCAATGAACTGAGGCAAAAAGCAAGAGAAATGTAG 999 44.34 MAVQTHVYTGLALASTPSSSFQPSSSKPATLCAATKLLRTSFLNGGGNILQITEMKSLHFDQSHGCRRGGALGARMNLFDRFARVVKSYANALVSSFEDPEKILEQTVLEMNDDLTKMRQATAQVLASQKRLENKYKSAQQAADDWYRKAQFALQKGDDDLAREALKRRKSFADNANSLKAQLDQQKNVVENLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMAMESQAEALGQLTADDLEGKFALLEGSSVDDELANLKKELSGSSKKGELPPGRTVSGSAFPVRDAEIESELNELRQKAREM 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10960965 10969243 + CmaCh14G014280.1 Cma14g01428 308411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01428 332 Coils Coil 243 263 - -
Cma14g01428 332 Coils Coil 176 224 - -
Cma14g01428 332 MobiDBLite consensus disorder prediction 291 316 - -
Cma14g01428 332 PANTHER MEMBRANE-ASSOCIATED 30 KDA PROTEIN, CHLOROPLASTIC-LIKE 1 331 - -
Cma14g01428 332 Coils Coil 315 332 - -
Cma14g01428 332 PANTHER MEMBRANE-ASSOCIATED PROTEIN VIPP1, CHLOROPLASTIC 1 331 IPR007157 -
Cma14g01428 332 Pfam PspA/IM30 family 77 290 IPR007157 -
Cma14g01428 332 Coils Coil 129 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01428 K03969 pspA; phage shock protein A - csv:101219852 583.563
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01697 Cma14g01428 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01428 Cma-Chr14:10960965 Cma06g01697 Cma-Chr6:10429201 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1293 . . . . . . . . . . Cma06g01697 Cma14g01428 . Car14g01258 . . Cpe03g01200 . . . . . . . . . . . . . . . . . Cone11ag0666 . . . Cme07g01951 . . . . . . . . . . Cmo14g01464 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004034 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01428 Cma_Chr14 FPKM 6.605263 6.407914 17.758392 18.001652 35.632385 36.737034 37.396824 20.44993 21.049339 21.131268