Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01468 ATGTGGAAACCTACAATCTCTTTACAGATCCTGAGATATATATTAACTCGAACATTACTACATCCAACCCTCCGTGGGTATCTTCTAATTTCTCAAGATATAATGAGAGCACCATCATTGCTAGCCCAGTGCTTGCCTGGCTTGGTGCCCCAAGATAAAGGAAGCCACAGCAGTCCTTCCATTTCAGAGAGAGATATCCATCTCCCCTCACCAGCTGTTGAGATTCTCCCTTCAAAGACAGCTCTTCCATACAAATATGCAGGGGAGAACGTAGATTTGCAAGGTCTCAATGTCTTTAAGGGTAGATTTAGTGTTGCCGATATAATGGGCTTGAATAGCTCGGAGTCTACATCTTCAAAACCTGAAGGTCATTTGAAATCTTGGGACAGTTCCATGTATCTGGTTAATGTTCTTAAATATGAGATTTGTGATGGACAGCTGAGCTTTAGAGGAAAAAAAGTACTTGAGCTGGGTTGTAGCTATGGACTTCCTGGGGTGTTTGCTTGCCTCAAGGGAGCAAGCATAGTGCACTTTCAAGACATGAGTGCAGAAACTATTAGATGCATAACCATACCGAATGTCCTTGCCAATCTCGAACAAGCTCGGGACAGGCAGAGTCGACAGCCAGAGAGTCCCTTAACTCCGTCCCGACATGCTTTGACCCCATCAGTACATTTTTATGCTGGTGACTGGGAAGAGCTCCCAACAGTCTTATCTGTAGTTCGGGGTGATGGATTCGAAGCACCTACCGGAATGAGCTTGAGCTTCTCAGAAGAAGATTTTATGGATGGTTGCAGCAGTCAAGACGGTAGCATCATCGGCCATGAGTCTTCTTCAAGAAGATCGAGGAAACTATCAGCAAGTCGAGCATGGGAGAGGGCTAACGAGATCGGTCAGGAAGAAGGCGGATACGATATCGTTTTAATGGCAGAAATCCCGTATTCACTCAACTCTTTGAAGAAGCTATATGCACTGATAAAAAAGTGTGTGAGGCCTCCTTATGGAGTGTTGTACTTGGCCACAAAGAAGAACTACGTCGGTTTCAATAACGGAGCGAGGCATTTGAGGAGTTTGGTCGATGAGGAAGGCGTTTTTGGAGCTCACTTGGTCGAGGAGATGACGGACCGAGACATTTGGAAGTTCTTTCTCAAGTGA 1155 45.28 MWKPTISLQILRYILTRTLLHPTLRGYLLISQDIMRAPSLLAQCLPGLVPQDKGSHSSPSISERDIHLPSPAVEILPSKTALPYKYAGENVDLQGLNVFKGRFSVADIMGLNSSESTSSKPEGHLKSWDSSMYLVNVLKYEICDGQLSFRGKKVLELGCSYGLPGVFACLKGASIVHFQDMSAETIRCITIPNVLANLEQARDRQSRQPESPLTPSRHALTPSVHFYAGDWEELPTVLSVVRGDGFEAPTGMSLSFSEEDFMDGCSSQDGSIIGHESSSRRSRKLSASRAWERANEIGQEEGGYDIVLMAEIPYSLNSLKKLYALIKKCVRPPYGVLYLATKKNYVGFNNGARHLRSLVDEEGVFGAHLVEEMTDRDIWKFFLK 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11181982 11189519 + CmaCh14G014680.1 Cma14g01468 308451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01468 384 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 137 347 IPR029063 -
Cma14g01468 384 Gene3D Vaccinia Virus protein VP39 109 362 IPR029063 -
Cma14g01468 384 PANTHER HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 35 380 IPR019410 -
Cma14g01468 384 PANTHER OS09G0514300 PROTEIN 35 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01468 - - - cmax:111479415 693.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01651 Cma14g01468 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01653 Cma-Chr6:10249230 Cma14g01468 Cma-Chr14:11181982 6.33E-152 dispersed
Cma14g01468 Cma-Chr14:11181982 Cma14g01544 Cma-Chr14:11651397 2.21E-59 dispersed
Cma14g01468 Cma-Chr14:11181982 Cma06g01659 Cma-Chr6:10259874 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1198 . . . . . . . . . . Cma06g01651 Cma14g01468 Car06g01402 Car14g01304 Sed12g0631 Cpe08g00080 Cpe03g01237 Bhi01g02695 Tan10g1290 Cmetu07g1206 . Hepe05g1226 . Lcy11g1139 . . . . . . . . . . Cone11ag0615 . . . Cme07g01895 . . Bda11g00459 . . Bpe13g00737 . Bma06g01395 . Cmo06g01654 Cmo14g01507 . . . . . . . . . . . . . Cla07g01484 Cam07g1580 Cec07g1680 Cco07g1640 Clacu07g1571 Cmu07g1539 Cre07g1916 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005791 1 3 0 1 1 1 2 1 1 1 1 1 4 1 1 2 1 2 3 1 1 1 1 1 1 0 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01468 Cma_Chr14 FPKM 21.087982 22.61908 24.749172 23.117632 13.933003 14.835738 16.407469 23.443703 24.399271 24.579401