Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01469 ATGTTTCTTGCTTGTCCTATTCGGAACTCGGCGCTTTCGATTACATTTGCGCGAAGAATTACATGCACTGGCATGTCGAAACGAAGTTCATCTTCCATGCCAATAACCTCAAACGAACCCCTTCCAGGAATTTCAGGTGTTCAATCTTCCAATGGCGTTTCTAAGTCTGAAACTCGTGTATTCGTGAGGAGAACAGTGAAGAAGAAGGCAGAAGGTCAAGGTAGCGGGCTTGACCTAGAACTTAAAGACGACTTTAAACACTGCTGTCCTAATATTGAAGATTTTGCATTCAAAAGAACAAAGGATTCCCCTGGATCAAGGAAGTCTAAGCCTCCTCTAGATACCCTTCTCACCAGAATTGAAGATTCTAATCCAACTAGACAAAAAGGCGTTGCAGAAGGAGGTAAACCCCCTGTGGATTGGGAAAAAGTCCTTGAAGGAATTCGGGAAATGAGATCGTCTGAAGTAGCTCCAGTAGACACCATGGGATGCGGGCGAGCTGGTAGTACTCTTCCTCCAAAGGAAAGAAGATTTGCTGTCTTGGCATCTTCTCTTCTCTCAAGCCAAACCAAAGACCACGTAACTCATGGAGCAGCATTGCGTCTCCAAGAAAGCGGTCTTCTTACAGCTGATGCCATGGACAAAGCAGATGAATCAACCATTAAAAGCTTGATTTACCCTGTTGGATTTTATTCTACAAAGGCTAAAAATTTGAAGAAGATTGCAAAAATATGTCTTATGAAGTATGGTGGGGACATACCTAGATCATTGGAGGAGCTACTTCTACTGCCTGGGATAGGCCCTAAGATTGCACATTTGATCATGATTATGGCGTGGAACGATGTTCAGGGGATATGTGTCGATACTCATGTCCATCGCATTTGCAATCGGCTTGGATGGGTGTCTGGGAAAGGCTCAAAACAGAAAACTTCCTCTCCTGAAGAAACTCGAGTGGCATTAGAACTATGGCTGCCAAAGGAAGAATGGGTTCCAATTAATCCTCTTCTGGTGGGATTTGGACAGACTATTTGCACTCCCCTTAGACCCAAGTGTGGAAATTGCAGTGTTAGCCACTTGTGTCCATCTGCTTTCAATGAGGCTTCTAGCCCTTCTCCCAAATTAAAGCGTTCAAGTTCCACCAAGTAG 1146 44.24 MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNEPLPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQGSGLDLELKDDFKHCCPNIEDFAFKRTKDSPGSRKSKPPLDTLLTRIEDSNPTRQKGVAEGGKPPVDWEKVLEGIREMRSSEVAPVDTMGCGRAGSTLPPKERRFAVLASSLLSSQTKDHVTHGAALRLQESGLLTADAMDKADESTIKSLIYPVGFYSTKAKNLKKIAKICLMKYGGDIPRSLEELLLLPGIGPKIAHLIMIMAWNDVQGICVDTHVHRICNRLGWVSGKGSKQKTSSPEETRVALELWLPKEEWVPINPLLVGFGQTICTPLRPKCGNCSVSHLCPSAFNEASSPSPKLKRSSSTK 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11190459 11196360 + CmaCh14G014690.1 Cma14g01469 308452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01469 381 Pfam Helix-hairpin-helix motif 248 275 IPR000445 GO:0003677
Cma14g01469 381 ProSitePatterns Endonuclease III family signature. 251 280 IPR004036 -
Cma14g01469 381 MobiDBLite consensus disorder prediction 99 139 - -
Cma14g01469 381 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 65 377 - -
Cma14g01469 381 MobiDBLite consensus disorder prediction 26 56 - -
Cma14g01469 381 Gene3D Hypothetical protein; domain 2 169 276 - -
Cma14g01469 381 Hamap Endonuclease III-like protein 1 [NTHL1]. 137 366 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Cma14g01469 381 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 344 360 IPR004035 -
Cma14g01469 381 CDD ENDO3c 178 340 IPR003265 GO:0006284
Cma14g01469 381 SMART ccc3 343 363 IPR003651 GO:0051539
Cma14g01469 381 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 65 377 - -
Cma14g01469 381 SMART endo3end 186 342 IPR003265 GO:0006284
Cma14g01469 381 SUPERFAMILY DNA-glycosylase 148 371 IPR011257 GO:0003824|GO:0006281
Cma14g01469 381 Pfam HhH-GPD superfamily base excision DNA repair protein 183 310 IPR003265 GO:0006284
Cma14g01469 381 Gene3D - 277 365 IPR023170 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01469 K10773 NTH; endonuclease III [EC:4.2.99.18] - csv:101212347 631.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01469 Cma-Chr14:11190459 Cma17g01389 Cma-Chr17:9254363 2.18E-12 dispersed
Cma14g01469 Cma-Chr14:11190459 Cma18g00931 Cma-Chr18:7992795 5.00E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1201 . . . . . . . . . . . Cma14g01469 . Car14g01306 . . Cpe03g01238 Bhi01g02693 . . . Hepe05g1227 . Lcy11g1140 . . . . . . . . . . Cone11ag0617 . . . Cme07g01894 . . Bda11g00458 . . . . Bma06g01418 . . Cmo14g01508 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010237 1 4 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01469 Cma_Chr14 FPKM 2.679896 2.039071 6.576401 6.93595 9.202157 9.393719 10.075953 4.024148 4.439089 4.41164