Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01480 ATGGCTATTACGATGGCTAGGTCTTTTCTGCAGGTTGCTGCTACGGAAGAGGTTGCTACCCCTCTCCGAGTGGTTCAGATTGAAGGATTGGGAATTTCCTCCTTTCCTTTTTCTTATTTTGTGTCTGATTTGATTTTGAAGTTGAACCTTCCAATTTGGATTCAGAATTGCTGTTATATCGGTTCTGCCTCGTTCCTGTCCACACTGTCTTCTTTGCGAAGGAAGAAAATTTTTTATAGTTCTCTTTGGCACGTTATATTGAAGATAATCAAGCATTGCAAAGAGTTTTCACCAGCCCTTGTGACTGGGCAGCTTCTTGGATTAGATGTTGGTAGTGTTCTTGAAGTCACTAATTGCTTTCCCTTTCCGACACGGGAGGAGGATGAGGAGATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGATGTCTGAGAGAAGTCAATGTTGACAATAACACTGTCGGATGGTATCAGTCGACCTTCTTAGGTTCATATCAGACAGTAGAGCTGATTGAGACCTTTATGAATTATCAGGAAAATATTAGGCGGTGTGTCTGCATAATTTATGACCCATCAAGGTCTAATCAAGGCGTCTTAGCTCTCAAAGCATTGAAGCTTTCAGATTCTTTTATGGAGCTTTACCGCAGTAACAACTTTACAGGAGAGAAGTTGAGAGAGAAGAACTTATCATGGGTGGATATTTTTGAAGAAATACCTGTATGTCACTTGGACCCCCCATATCCTTGTCCGGATCTTACTCTGATAATTGGTCAAAAATCAAAGTTTCATAGTGATTTTATGACGGAGCTTGAAGCTGACTCGCCAGTCACCCAGTGTGATTATGACCGCCTGCAACTTCCAGCGAATCCATTTATGGAGAGGAATGTGGAATTTCTGATTGAATGTATGGATGATTTGTCGGTCGAGCAGCAGAAGTTCCAATTCTATTATCGAAGCCTGACACGTCAGCAAGCTCAGCAGCAAGCATGGCTTCAGAAGAGGAGGGCAGAGAATGCGATGAGGAAAGCAGCAGGAGAAGAACCTCTCCCTGAGGAGGATCCTACAAACCCCATCTTTAAACCACTCCCTGAGCCATCACGTTTGGATAGCTATCTCATAACGAATCAAATAGCAAATTACTGCAATCAAATTAATGGGGTTGGTGGACAGAGTTTCAACAAGCTTCATTTGATGAAGGCTTTGCACGACAGTTAA 1221 42.42 MAITMARSFLQVAATEEVATPLRVVQIEGLGISSFPFSYFVSDLILKLNLPIWIQNCCYIGSASFLSTLSSLRRKKIFYSSLWHVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPVCHLDPPYPCPDLTLIIGQKSKFHSDFMTELEADSPVTQCDYDRLQLPANPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQAWLQKRRAENAMRKAAGEEPLPEEDPTNPIFKPLPEPSRLDSYLITNQIANYCNQINGVGGQSFNKLHLMKALHDS 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11250182 11254694 + CmaCh14G014800.1 Cma14g01480 308463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01480 406 MobiDBLite consensus disorder prediction 338 363 - -
Cma14g01480 406 Pfam C-terminal region of eIF3h 197 404 IPR045810 -
Cma14g01480 406 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 85 180 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cma14g01480 406 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 86 405 - -
Cma14g01480 406 Gene3D Cytidine Deaminase, domain 2 79 247 - -
Cma14g01480 406 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 3 32 - -
Cma14g01480 406 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H 86 405 - -
Cma14g01480 406 SMART pad1_6 76 211 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cma14g01480 406 ProSiteProfiles MPN domain profile. 79 212 IPR037518 -
Cma14g01480 406 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H 3 32 - -
Cma14g01480 406 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 75 406 IPR027524 GO:0003743|GO:0005737|GO:0005852
Cma14g01480 406 CDD MPN_eIF3h 85 355 IPR027524 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01480 Cma-Chr14:11250182 Cma06g01642 Cma-Chr6:10206666 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01480 K03247 - csv:101211860 571.622