Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01489 ATGCGCAGGTGGCTTTGTTGTACTTGTCAAGTTGAGGAAGCCTACCCATTAGCAGAAAGTGAGCACCTGAAAAGCCCACGAAGTTATGGAGATGGTTATTATCGACGGGACTCGAAAGAGTCGGCTCCTGCCCCATATGAAGCCCCAAAATCTCCACCTCCCATAGAAGTGCCAGCATTGTCTCTGGAAGAACTAAAAGAAAAAACAGACAACTTTGGGTCCAAGGCACTGATTGGCGAAGGATCTTATGGTCGAGTTTATTTTGCTAACTTAAACAATGGGAAATCTGTGGCGGTAAAGAAGCTGGATGTTTCCTCTGAATCTGATTCGAGTATTGACTTCTTGACTCAGGTTTCTACAGTCTCAAGGTTGAAACATGAAAATTTTGTTGAATTGCATGGATATTGTGTTGAAGGAAACCTCCGTGTACTTGCATATGAATTTGCAACTATGGGTTCTCTACATGACATATTGCATGGTAGAAAGGGTGTGCAAGGGGCACAGCCAGGTCCCGTGCTTGATTGGATACAGCGTGTGAGAATTGCGGTTGATGCAGCTCGAGGATTGGAATACTTGCACGAGAAAGTTCAACCTTCTATCATTCATAGAGATGTTAGATCCAGCAATGTGCTTCTCTTTGAAGACTTCAAAGCAAAGATTGCAGACTTTAACCTTTCAAACCAGGCTCCTGACATGGCTGCTCGACTTCATTCTACTCGAGTTTTAGGAACTTTTGGCTATCATGCTCCAGAGTATGCAATGACTGGACAGTTGACACAGAAGAGTGACGTCTACAGCTTTGGAGTTGTTCTACTCGAGCTTTTGACCGGGAGGAAACCTGTCGATCACACCATGCCTCGTGGGCAGCAGAGTCTTGTTACTTGGGCTACCCCAAGACTAAGTGAAGACAAAGTTAAACAATGTGTTGATCCAAGGCTGAAGGGTGAATATCCTCCCAAAGGAGTTGCCAAGCTGGCTGCTGTAGCAGCTCTGTGTGTCCAGTACGAAGCGGAGTTCAGGCCGAACATGAGCATCGTCGTTAAGGCTCTCCAGCCGCTTCTAAGGCCTCCTGCCCCGGCTCATGCTCCGGAACCGTGA 1098 46.63 MRRWLCCTCQVEEAYPLAESEHLKSPRSYGDGYYRRDSKESAPAPYEAPKSPPPIEVPALSLEELKEKTDNFGSKALIGEGSYGRVYFANLNNGKSVAVKKLDVSSESDSSIDFLTQVSTVSRLKHENFVELHGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPVLDWIQRVRIAVDAARGLEYLHEKVQPSIIHRDVRSSNVLLFEDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPRLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLRPPAPAHAPEP 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11296614 11299447 + CmaCh14G014890.1 Cma14g01489 308472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01489 365 SMART tyrkin_6 72 350 IPR020635 GO:0004713|GO:0006468
Cma14g01489 365 Pfam Protein tyrosine and serine/threonine kinase 77 350 IPR001245 GO:0004672|GO:0006468
Cma14g01489 365 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 ISOFORM X2 1 364 - -
Cma14g01489 365 MobiDBLite consensus disorder prediction 21 54 - -
Cma14g01489 365 Gene3D Transferase(Phosphotransferase) domain 1 150 357 - -
Cma14g01489 365 ProSitePatterns Tyrosine protein kinases specific active-site signature. 200 212 IPR008266 GO:0004672|GO:0006468
Cma14g01489 365 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 364 - -
Cma14g01489 365 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Cma14g01489 365 MobiDBLite consensus disorder prediction 21 43 - -
Cma14g01489 365 SUPERFAMILY Protein kinase-like (PK-like) 54 358 IPR011009 -
Cma14g01489 365 ProSiteProfiles Protein kinase domain profile. 72 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g01489 365 Gene3D Phosphorylase Kinase; domain 1 48 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01489 K13436 PTI1; pto-interacting protein 1 [EC:2.7.11.1] - csv:101215403 644.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01635 Cma14g01489 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00083 Cma-Chr8:434652 Cma14g01489 Cma-Chr14:11296614 0 dispersed
Cma08g00496 Cma-Chr8:2810617 Cma14g01489 Cma-Chr14:11296614 3.20E-168 dispersed
Cma14g00404 Cma-Chr14:1890482 Cma14g01489 Cma-Chr14:11296614 4.54E-175 dispersed
Cma14g00960 Cma-Chr14:4990221 Cma14g01489 Cma-Chr14:11296614 6.66E-166 dispersed
Cma14g01489 Cma-Chr14:11296614 Cma17g00590 Cma-Chr17:4874925 0 dispersed
Cma17g00995 Cma-Chr17:7299224 Cma14g01489 Cma-Chr14:11296614 1.61E-30 dispersed
Cma14g01489 Cma-Chr14:11296614 Cma06g01635 Cma-Chr6:10181522 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1140 . . . . . . . Bma05g01241 Cmo08g00086 . Cma06g01635 Cma14g01489 Car06g01390 Car14g01325 . Cpe08g00093 Cpe03g01253 Bhi01g02647 . . . . . . . . . . . . . . . Cone18ag0891 . . . . Cme07g01866 Blo02g00458 Blo07g00096 Bda11g00468 Bda13g00238 . Bpe13g00714 Bma02g00954 Bma06g01451 . Cmo06g01634 Cmo14g01526 . . Car08g00069 . . Cpe17g00994 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000194 4 9 5 8 6 5 8 4 4 5 5 3 9 5 3 9 4 2 6 5 5 6 4 3 4 5 4 0 1 4 145
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69093 PF07714 PK_Tyr_Ser-Thr 5.70E-46 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01489 Cma_Chr14 FPKM 18.691137 23.520813 13.687922 14.115351 20.198467 17.894003 17.580133 11.464239 11.236074 12.587334