Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01498 ATGAAGAAGGTCTTTGATCAAACAGTTAGAGACATAAAGAGAGAGGTCAATAAGACCGTGCTCAAAATTCCGAAAATAGAGCAGAAGGTTTTGGATGCCACTAGCAATGAGCCTTGGGGGCCTCATGGATCCCTTCTTGCAGATATAGCAGAGGAAACTAGAAATCATCATGAATATCAATTGATCATGGGAATAATCTGGAAGCGGATTAATGATACGGGCAAGAATTGGAGGCATGTCTACAAGGGGTCTTTCAACGGAGAAGATCTTAGTAGTTTTTCTCGTTTTCTTTCAACCTTTCCATTTTTGTATGGAAGCTCTTATGAACTGACAGTTGGTTTGACTGTTTTGGAGTACTTGGTGGGTCATGGGTCAGAGCGAGTCATAGACGACATCAGAGAACATGCATATCAGATATCGACCTTATCGAATTTTCAATACATCGATTCGAGTGCGAGGGATCAGGGTAACAATGTTAGAAAGAAATCTCTAAATCTTGTTGCTCTTGTAAATGATGAAGAAAGGATCGTTGAGGTCAGACAGAAAGCTGCTGCTAATAGGGACAAGTTTCGCAGCCCATCATCTATGAGCCGTATGTATAGATCAAGAACAGGAGGATATGACGAGCGCTATGAAGGACGATATGGAAGCTATGATGGAGACAAAAATGTTGATTCTTTTGGGAGGGAAAGGGACTATGGTTTCAGAGATGATCGTTTGGGCAGAAACAAAGATTCATATGGTCGTGATTACGAAGGACGCTATAACAGAGATTGTTATAAGGATGATGATTATCGTGGAAGAAGTCGAAGCATTGATGGTCATCAGTATGGTTCAAGGAGCAGGAGCTATGACAGAGATGGAGAACGTACATATGATGACGATGGTCACGTTTCTTCTCGCAACAATCGTGCCAGAGCACACGAGCCATCTCCGGTTGGAAGGAAGCTTGAACGTAAATTTTCGGAACAGAATCTTAGTTTCCCACCTAGTTATGAAGAAGCTGTGAATGAATCTGGAAGATCTGTGCATAGTCAAAGAGATGTAGAAGCTCCAGCAACTATGGCTCCAAGAGCTTTTCCTCCACCGACGTCCAGTACTCCGAGCCAGCTAACTAGTCATGGAACCTCTACACCCCCGCCTACCCAGGGATTTGATCGTCCTGATGAATTTGACCCCCGGGGTTCTGTTCCAGCTGCTCCAACGATCTCAAGCAGTTCGGAGACGAATTTATTCGACTCCTTGGCCTTAGTGCCTGTTGAGCCAGTAACATCAACTGCAGACTCCAAGAGTTGTGTTCGGAAAAGCTCTGCAGAGGGTTCCTATACTCAAAATCAGGCAATTTTCTCGCTTTCATATACCCATGACTTGATGCTTTCTCATCGATCTTATTCCCGGCATTGCCGAGAGCATACTTCTAAAGACCCATTTGGTGACTCGTCTTTTAAAGCCGTTCCTTCCTCTGGTGTCCAAGATCAAGCAGATTTTCATCATGGGGAATTGGTTTCTGCAGCATCTTACTCTAAACCGGACATCCCTGTTCAACCTCAACCGAACTTGCACCATCCTCGTGAAGAGTCACTGCTACATCAAGATATTGGTGTACTGGCTGATCTCCTTCCTCCTCCTGAAACTTTACCAGCTGTTGTTTCACAGCCCACATTTACAATATCAAACCAACCAGCACATCCAAATTTTTCAGCTGTATCTGGCTTGCCTGCACAGCCAAATTCTAACTTGGGGAACTATCAGCAATATGGAAGTATTGCTCCTATGAATTTCCAAAATCAAACAGAACCAGGGAGAGAGTTTGGCAATGGGATGTTCATAACACAGGGAGGAACACCAGCTCATGTCAATTCATATATGGCTCCTCCTCATGCTGGACCTAATATACAGCCCAATAATCATGGATCCTCTCAGAACGGTTCTGCAGTTCCCACGAGTTCTCACGTCGCACTTCAAGCTTCCAGTTCTGTAGCTCCAGTGGCTTATTCATTTCCTTTTGTACAATCTAACCCAGAGGTTATGGGTAGTTTTAATCCTCAAGCAGGAAACTATACTGCCATGGCTTACCAGCAAATTCCTCCAGTCGAATCACTTTCAAAGGTGTCTCAAGCTTCGAAGAATAAGTTCGAGACCAAGTCCACAGTATGGTCTGACACATTAAGCAGAGGACTTGTCAATTTAAACATATCTGGACCTAAAGCAAACCCATTGGTGGACATTGGTGTTGATTTTGAATCCCTCAGTAGGAGGGAAAAGAGGATGGAGAAGCCTAGTATAGCTCCAATGGTATCTACCATTAACATGGGTAAAGCTATGGGATCTGGTTCTGGGATAGGCCGAGCCGGTGCAGGTGTAATAAGGCCTCCTCCAAATGCGATGTCGGGTACAGGTATGGGTATGGGCATGAGAGGCTATGGAGGTATGAATCAACCCATGGGTGGCATGGGGATGAATATGGTTATGGGGCAACAAGGAATACAAATGCAGCAACCTCGAGCGAACATGTCCGGTGTATACAATCCAATGATGGGCGCTGGTGGTTATGCCCCTCAACAGCCACGGTACGGCGGTTACCGATGA 2589 44.84 MKKVFDQTVRDIKREVNKTVLKIPKIEQKVLDATSNEPWGPHGSLLADIAEETRNHHEYQLIMGIIWKRINDTGKNWRHVYKGSFNGEDLSSFSRFLSTFPFLYGSSYELTVGLTVLEYLVGHGSERVIDDIREHAYQISTLSNFQYIDSSARDQGNNVRKKSLNLVALVNDEERIVEVRQKAAANRDKFRSPSSMSRMYRSRTGGYDERYEGRYGSYDGDKNVDSFGRERDYGFRDDRLGRNKDSYGRDYEGRYNRDCYKDDDYRGRSRSIDGHQYGSRSRSYDRDGERTYDDDGHVSSRNNRARAHEPSPVGRKLERKFSEQNLSFPPSYEEAVNESGRSVHSQRDVEAPATMAPRAFPPPTSSTPSQLTSHGTSTPPPTQGFDRPDEFDPRGSVPAAPTISSSSETNLFDSLALVPVEPVTSTADSKSCVRKSSAEGSYTQNQAIFSLSYTHDLMLSHRSYSRHCREHTSKDPFGDSSFKAVPSSGVQDQADFHHGELVSAASYSKPDIPVQPQPNLHHPREESLLHQDIGVLADLLPPPETLPAVVSQPTFTISNQPAHPNFSAVSGLPAQPNSNLGNYQQYGSIAPMNFQNQTEPGREFGNGMFITQGGTPAHVNSYMAPPHAGPNIQPNNHGSSQNGSAVPTSSHVALQASSSVAPVAYSFPFVQSNPEVMGSFNPQAGNYTAMAYQQIPPVESLSKVSQASKNKFETKSTVWSDTLSRGLVNLNISGPKANPLVDIGVDFESLSRREKRMEKPSIAPMVSTINMGKAMGSGSGIGRAGAGVIRPPPNAMSGTGMGMGMRGYGGMNQPMGGMGMNMVMGQQGIQMQQPRANMSGVYNPMMGAGGYAPQQPRYGGYR 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11338083 11344675 - CmaCh14G014980.1 Cma14g01498 308481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01498 862 MobiDBLite consensus disorder prediction 365 383 - -
Cma14g01498 862 PANTHER CLATHRIN INTERACTOR EPSIN 2-RELATED 113 843 - -
Cma14g01498 862 SMART enth_2 24 180 IPR013809 -
Cma14g01498 862 Gene3D - 23 192 IPR008942 -
Cma14g01498 862 SUPERFAMILY ENTH/VHS domain 113 192 IPR008942 -
Cma14g01498 862 PANTHER CLATHRIN INTERACTOR EPSIN 2-RELATED 1 83 - -
Cma14g01498 862 MobiDBLite consensus disorder prediction 626 650 - -
Cma14g01498 862 SUPERFAMILY ENTH/VHS domain 5 82 IPR008942 -
Cma14g01498 862 MobiDBLite consensus disorder prediction 632 650 - -
Cma14g01498 862 PANTHER EPSIN/ENT-RELATED 1 83 - -
Cma14g01498 862 PANTHER EPSIN/ENT-RELATED 113 843 - -
Cma14g01498 862 MobiDBLite consensus disorder prediction 209 406 - -
Cma14g01498 862 CDD ENTH 26 172 - -
Cma14g01498 862 MobiDBLite consensus disorder prediction 209 322 - -
Cma14g01498 862 Pfam ENTH domain 25 176 IPR013809 -
Cma14g01498 862 ProSiteProfiles ENTH domain profile. 18 180 IPR013809 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01498 K12471 EPN; epsin - csv:101208671 1150.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00087 Cma-Chr8:458260 Cma14g01498 Cma-Chr14:11338083 4.39E-39 dispersed
Cma12g00623 Cma-Chr12:3293812 Cma14g01498 Cma-Chr14:11338083 2.74E-13 dispersed
Cma14g01498 Cma-Chr14:11338083 Cma17g00582 Cma-Chr17:4824366 0 dispersed
Cma14g01498 Cma-Chr14:11338083 Cma06g01633 Cma-Chr6:10167263 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1118 . . . . . . . . . . . Cma14g01498 . Car14g01330 . . Cpe03g01258 Bhi01g02630 . . . Hepe05g1275 . . . . . . . . . . . . . . . . Cme07g01854 . . . . . . . . . . Cmo14g01533 . . . . . . . . . . . . . Cla07g01582 Cam07g1679 Cec07g1774 Cco07g1737 Clacu07g1663 Cmu07g1629 Cre07g2003 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01498 Cma_Chr14 FPKM 2.299244 2.125865 5.259113 5.150914 2.114205 1.912616 1.668073 9.212377 7.411592 8.449853