Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01511 ATGGGGGGTTTGGGAAATTCAGACAAGGCTTCTGAAGCTTCTCTTCGAAACCCTAGAAAGAAGCGCAAACAGCGGCCTCCTAACAAGCTCCGCACCAAGCCTAAGAGCACCAAGAAGAGGAAGTCCGATCCCACCCTTAATACCGATGCGCAAAATCCCATAAATGGTAGTGAAAGCAGTGCATTGGAGGCGCTTCCATTGGAGCCCTTCTCCTTTTTTTTGGATGAGTTCCAGACGGCTAATGACGTTCAAGTCTCTTCGCTGGAGCTTGACTCCATGAAAGGTAGATGCATGCTGGGTCCTCCACAAAGTTCAATTCAGGATGAAAAAACCTTGGTTAAACATATTAAGGAAGCTTTTGGATCATCGTGGAAAGAAGTTCTTTGTAAAGGGAAACTCTTGGAGGGAGAGACTGCTCCGGGCAGTCCTGCTGTTCTTATAATCAGCACATCTGCAATTAGGGCGATTGAACTTTTAAAGGGTTTTCGGTCGCTAACTCAAGAATGCCATGCTGTTAAGCTTTTCTCGAAGCACATGAAAATTGAGGAACAGGTAGAACTGTTGAAGAACCGTGTTAACATAGCGAGTGGTACACCAAGCAGGATTAAAAAACTGATTGATATTGAGGCCTTGGGGCTTTCAAGATTAGCAGTTATCGTGTTCGACATTCAACCGGATGTTAAGGGCTATTCTTTATTTTCGCTTCCACAAGTCAGGGATGAATTCTGGGATTTATACAAGAGCTACTTACACCAGCGAGTCGTCGAGGGTGGGCTGCGAATTTGCCTCTTTGGACCTTTACAACCATCTCGTAAGCGAAGGAAAAAAGAAGTTACCAGTCCAGGCAAATAA 852 45.07 MGGLGNSDKASEASLRNPRKKRKQRPPNKLRTKPKSTKKRKSDPTLNTDAQNPINGSESSALEALPLEPFSFFLDEFQTANDVQVSSLELDSMKGRCMLGPPQSSIQDEKTLVKHIKEAFGSSWKEVLCKGKLLEGETAPGSPAVLIISTSAIRAIELLKGFRSLTQECHAVKLFSKHMKIEEQVELLKNRVNIASGTPSRIKKLIDIEALGLSRLAVIVFDIQPDVKGYSLFSLPQVRDEFWDLYKSYLHQRVVEGGLRICLFGPLQPSRKRRKKEVTSPGK 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11424646 11427450 - CmaCh14G015110.1 Cma14g01511 308494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01511 283 Gene3D - 111 222 IPR027417 -
Cma14g01511 283 MobiDBLite consensus disorder prediction 1 57 - -
Cma14g01511 283 PANTHER PROTEIN CMSS1 10 264 IPR032704 -
Cma14g01511 283 MobiDBLite consensus disorder prediction 16 38 - -
Cma14g01511 283 Pfam U3-containing 90S pre-ribosomal complex subunit 21 263 IPR032704 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01511 - - K14784 cmax:111479452 537.724
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1097 . . . . . . . . . . . Cma14g01511 . Car14g01334 . . Cpe03g01268 . . . . . . . . . . . . . . . . . Cone11ag0633 . . . Cme07g01842 . Blo07g00102 Bda11g00471 . . . . Bma06g01431 . . Cmo14g01544 . . . . . . . . . . . . . Cla07g01591 Cam07g1687 Cec07g1784 Cco07g1745 Clacu07g1671 Cmu07g1638 Cre07g2012 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010982 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01511 Cma_Chr14 FPKM 7.472959 6.519799 6.963232 9.037545 12.516303 13.294032 16.180117 14.591146 13.842424 11.974281