Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01513 ATGCGCCATATGTACCAATCAAATTCCTCCTCCTCTTCCTCTCAGAAATTCATGGCCTCAGCCAACGCCGGCGTCGGTAGCGGCGGCGGCGGTGGCGGTGGTGGTCTCACTCGGTACGGTTCCGCGCCTGGATCTCTTCTGACTTCGGCAGTGGATTCCGTGATTGGAAGTCGGCATCCGGACTCTGTTTCCTCGCTCCGTACACCGCCGTCGTTCAGTGGCCACTACTTCTCCTCCGCCGACTCCTCCCTGAAATCGTCGTCATCCACTGCCGCTGCCGTGAGGTCGTACGGAATCCATGATTTAGCCCTAGGCGACTTCTCGACGGCTAGAAATTTCAATAGCAATGGTGGTCAATCCTCTTCCTCTTCGCCGTTAGTTCGCCAGAAAAGCTCGCCGGCTGGATTCCTCGGCCATCTCTCCGTCGCCGAACGAAACGGAGGAGGGTTTTCATTGACAATGGGAGGTGGTGGGAATAGCATAGGAAGACTGAAGTCCCAAGTGAGGTTGAACGGCCAAGATTCACTTTCTCAAATCTCTGAAATGAGTGAAGGCTTTATGGAGGCAGCCAATTCCTCTGCCAATGGCCTTACCCCCTCTACCTTTGGCATGGACTCTTGTTGGGACACTTCCAATAACTCCATTGTCTTTGGTGCCCCTCATGCTAAAACTTCCCGGCACCATCCCGACGCGGAGTTCTTCACCACCCTCGAGTCCCAGTTTAGCATGCCGCAGACAACTCTAGAAATGGCAACTGTGGAGAGGCTGCTTCAAATCCCTGAACACTCTGCTCCTTGTAAGATTCGAGCCAAGCGTGGTTGTGCCACTCATCCTCGTAGTATCGCCGAACGGGAGAGGAGAACGAGAATTAGTGGAAAGTTGAAGAAACTTCAAGACCTTGTTCCGAACATGGATAAGGCAATGTCGTCGTCGGACGATGAAGGAGGTGAGGAGTATCTCTTCAAGATCGTCATCATTGGAGACTCGGCGGTTGGTAAATCCAATTTGTTGTCTCGTTATGCTAGAAACGAGTTCAATCTCCATTCCAAGGCCACCATCGGCGTTGAATTCCAGACTCAGGTTATGGATATTGACGGCAAAGAGGTTAAGGCTCAGATTTGGGATACTGCCGGCCAGGAACGGTTTCGCGCCGTCACCTCTGCCTATTACCGCGGCGCCGTCGGTGCTCTCATCGTTTACGATATTAGCCGCCGTTCCACTTTCGATAGTGTTGGCCGATGGCTCGACGAGCTCAAGACTCATTCCGATACCACAGTGGCCAGGATGCTAGTTGGAAACAAATGCGACTTGGAGAACATTAGGGACGTGACTGTCGAGGAAGGCACGAGTCTTGCAGAAGCCGAAGGGTTCTTCTTCATGGAAACGTCTGCTTTAGACTCGACGAATGTTAAAAAGGCTTTCGAGATCGTGATCCGAGAAATATACAACAATGTGAGCAGGAAGGTCCTGAACTCAGATACCTACAAAGCAGAATTATCGGTCAACCGGGTGAGCCTCGTCAAGGACGGTGGATTGAAGCAATCAGAAAGCTATTTGTCTTGCTGTTCCAGGTGA 1575 51.94 MRHMYQSNSSSSSSQKFMASANAGVGSGGGGGGGGLTRYGSAPGSLLTSAVDSVIGSRHPDSVSSLRTPPSFSGHYFSSADSSLKSSSSTAAAVRSYGIHDLALGDFSTARNFNSNGGQSSSSSPLVRQKSSPAGFLGHLSVAERNGGGFSLTMGGGGNSIGRLKSQVRLNGQDSLSQISEMSEGFMEAANSSANGLTPSTFGMDSCWDTSNNSIVFGAPHAKTSRHHPDAEFFTTLESQFSMPQTTLEMATVERLLQIPEHSAPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKAMSSSDDEGGEEYLFKIVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQVMDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRSTFDSVGRWLDELKTHSDTTVARMLVGNKCDLENIRDVTVEEGTSLAEAEGFFFMETSALDSTNVKKAFEIVIREIYNNVSRKVLNSDTYKAELSVNRVSLVKDGGLKQSESYLSCCSR 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11430857 11437949 - CmaCh14G015130.1 Cma14g01513 308496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01513 524 SMART ran_sub_2 326 512 - -
Cma14g01513 524 PRINTS Transforming protein P21 ras signature 344 360 - -
Cma14g01513 524 PRINTS Transforming protein P21 ras signature 321 342 - -
Cma14g01513 524 PRINTS Transforming protein P21 ras signature 362 384 - -
Cma14g01513 524 PRINTS Transforming protein P21 ras signature 424 437 - -
Cma14g01513 524 PRINTS Transforming protein P21 ras signature 459 481 - -
Cma14g01513 524 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 309 IPR036638 GO:0046983
Cma14g01513 524 Pfam Ras family 322 482 IPR001806 GO:0003924|GO:0005525
Cma14g01513 524 ProSiteProfiles small GTPase Ras family profile. 309 507 IPR001806 GO:0003924|GO:0005525
Cma14g01513 524 MobiDBLite consensus disorder prediction 1 33 - -
Cma14g01513 524 PANTHER DRAB11-RELATED 308 524 - -
Cma14g01513 524 ProSiteProfiles small GTPase Rho family profile. 314 490 - -
Cma14g01513 524 SMART rab_sub_5 321 484 - -
Cma14g01513 524 SMART ras_sub_4 318 484 - -
Cma14g01513 524 MobiDBLite consensus disorder prediction 1 21 - -
Cma14g01513 524 Gene3D - 313 508 IPR027417 -
Cma14g01513 524 ProSiteProfiles small GTPase Rab1 family profile. 316 522 - -
Cma14g01513 524 CDD Rab11_like 318 482 - -
Cma14g01513 524 TIGRFAM small_GTP: small GTP-binding protein domain 319 477 IPR005225 GO:0005525
Cma14g01513 524 SMART rho_sub_3 323 484 IPR001806 GO:0003924|GO:0005525
Cma14g01513 524 PANTHER RAS-RELATED PROTEIN RABA5C 308 524 - -
Cma14g01513 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 491 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00251 Cma-Chr8:1416947 Cma14g01513 Cma-Chr14:11430857 1.37E-122 dispersed
Cma13g00382 Cma-Chr13:4427566 Cma14g01513 Cma-Chr14:11430857 3.16E-93 dispersed
Cma14g01513 Cma-Chr14:11430857 Cma17g01295 Cma-Chr17:8732370 3.21E-105 dispersed
Cma17g00942 Cma-Chr17:7038829 Cma14g01513 Cma-Chr14:11430857 6.69E-19 dispersed
Cma06g01622 Cma-Chr6:10094008 Cma14g01513 Cma-Chr14:11430857 8.19E-151 transposed
Cma14g01513 Cma-Chr14:11430857 Cma06g01621 Cma-Chr6:10091681 2.63E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01513 K07904 - bhj:120087044 412.535