Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01516 ATGGAGAAGAAAAGAGCAGTAAAGGAAGAGTCTTTTCTTCAGCACCCTGTCCTTTTTCTCCTTGTTCTGGTCTTGGGCTTTATACTAATGGACCCATTTAAAATGGGCCCAGTTGGAGGCCACGATTTCAGGCCCGTGAAGCATGACATTGCTCCTTACAGCCAGGTAATGGGCCGTTGGCCCAAGGACAATCAGAGCCGTTTGGGCCTTGGAAATTTGGAATTTGAAGATCAGGTTTTTGGGCCTGAATCCTTGGAGTTTGATGCTTTGGGCCGTGGGCCTTACACTGGGCTTGCTGATGGCCGCATTGTTAGATGGATGGGTGAGGAAGTTGGGTGGGAGACTTTTGCAATTGTCACAACAAAATGGTCAGAGAAGGAATGTGCACAAGGGGTTGATTCAACCACAGCCAAACAATGGAAGAATGAGAAGAAATGTGGAAGGCCCCTTGGCCTAAGATTTGAGAAAGAAACAGGGAATTTGTACATTGCTGATGCATATTATGGGCTTCTTATGGTTGGCCCTCAAGGGGGCATTGCCACTCCCTTGGCTACCCATGTTGATGGCACTCCCATTCTCTTTGCCAATGATCTTGATATCCATAACAATGGCTCCATCTTCTTCACTGACACGAGCAAGAGATATAATCGAGTTGATCATTTCTTCATCTTGTTGGAAGGAGAAGCTTCGGGTAGGCTTTTGAGATATGATCCTCCTACTAAAACAACTCATGTCGTGTTGAATGGCTTGGCCTTTCCAAATGGTGTGCAATTGTCTAAAGATCATAGCTTCCTTCTTTATACTGAAACTACTAATTGCAGATTAATGAAGCTGTGGCTAGGGGGATCAAGAAATGGAAAAGTAGAGGTAGTAGCAAATCTTCCAGGGTTTCCAGACAATGTAAGAAGAAACGAAAGAAACGAGTATTGGGTAGCCATAGATTGCTGTAGAACAAAAGCACAAGAGATACTAGCACACAATCCATGGATAAGGAGTATCTATTTCAGGCTGCCATTGAGAATGAGCTTGCTGGCCAGGCTTATGGGCATGAAAATGTACACTGTCATCTCTCTTTTTAGTGAAAATGGAGAGCTTTTAGAAGTTCTTGAGGATCAAAAGGGTGAAGTTATGAAGCTGATGAGTGAAGTTAGAGAAGTTCATGGGAAGCTTTGGATTGGAACTGTGGCTCATAACCATATTGCTACCTTGACTTACCCTTTACAAATTAACAACAACAATGCTTAA 1245 43.53 MEKKRAVKEESFLQHPVLFLLVLVLGFILMDPFKMGPVGGHDFRPVKHDIAPYSQVMGRWPKDNQSRLGLGNLEFEDQVFGPESLEFDALGRGPYTGLADGRIVRWMGEEVGWETFAIVTTKWSEKECAQGVDSTTAKQWKNEKKCGRPLGLRFEKETGNLYIADAYYGLLMVGPQGGIATPLATHVDGTPILFANDLDIHNNGSIFFTDTSKRYNRVDHFFILLEGEASGRLLRYDPPTKTTHVVLNGLAFPNGVQLSKDHSFLLYTETTNCRLMKLWLGGSRNGKVEVVANLPGFPDNVRRNERNEYWVAIDCCRTKAQEILAHNPWIRSIYFRLPLRMSLLARLMGMKMYTVISLFSENGELLEVLEDQKGEVMKLMSEVREVHGKLWIGTVAHNHIATLTYPLQINNNNA 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11477786 11479994 + CmaCh14G015160.1 Cma14g01516 308499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01516 414 Gene3D - 65 413 IPR011042 -
Cma14g01516 414 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 13 5 406 - -
Cma14g01516 414 Pfam Strictosidine synthase-like, N-terminal 79 106 - -
Cma14g01516 414 PANTHER STRICTOSIDINE SYNTHASE-RELATED 5 406 - -
Cma14g01516 414 Pfam Strictosidine synthase 196 281 IPR018119 GO:0009058|GO:0016844
Cma14g01516 414 SUPERFAMILY Calcium-dependent phosphotriesterase 73 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01516 - - - csv:101216745 765.763
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00514 Cma-Chr14:2551422 Cma14g01516 Cma-Chr14:11477786 9.89E-94 dispersed
Cma14g01516 Cma-Chr14:11477786 Cma15g00839 Cma-Chr15:4249744 9.95E-77 dispersed
Cma14g01516 Cma-Chr14:11477786 Cma06g00012 Cma-Chr6:90749 2.03E-95 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1250 . . . . . Bpe14g01059 . . . . . Cma14g01516 . Car14g01340 . . . . . . . . . . . . . . . . . . . Cone18ag0850 . . . . . Blo02g00445 . . . . . . . . . Cmo14g01550 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012010 0 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01516 Cma_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0