Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01518 ATGGACAACGAGAAGCCCCAATGCCGTGGGGGAGGATTTCTGCAGGAATCAACTCGTTACTCGGGGTTTTCATCGGCTGAAAGTAGTTTCAATGGAAAATCTGAGGCAGCCTCGTCTTCAATGTCATTGCCTCCATTGGCTCCGAGTGGTAATTCCGATTGGGGTCAATCTGGCCGTGGAATGTCCACCGATTCCAATCGGTTTAGCCATGATATTAGTCGAATGCCTGAAAATCCGCGGCGAAATGTTGGTCACAGACGTGCTCATTCAGAGATTCTGACCCTCCCAGATGATATCTGTTTCGATAGTGACCTTGGTATCATTGGCGGTGGTGATGGGCCTTCTCTTTCCGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCCCCTGGTACTTCTGCTACTCAAGTGGGTGATTCATCTTCCTCTGTTGTAGAAGCAGCGGCTACTTCTACAGATGATATTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACATCAGCATAGCCAGTCCATGGACGGCGTGACAAACATCAAACCTGAGATGCTTGTCACGGGGTCTGAAGAAGCCTCTGCAGCTGACTCCAAGAAAGCCGTGTCAGCTGCTAAGCTTGCTGAGCTTGCGTTGATTGACCCCAAACGTGCAAAAAGGATATGGGCGAACAGACAGTCAGCTGCACGGTCAAAGGAACGAAAGATGCGGTACATTGCTGAGCTTGAAAGGAAAGTTCAAACATTGCAAACAGAGGCAACTTCCTTGTCTACTCAGTTGACTCTCTTACAGAGAGATGCAAATGGTATCACTGCCGAGAACAGTGAATTAAAGCTGCGATTGCAGACAATGGAACAGCAGGTTCACCTGCAAGATGCTTTAAATGAAGCACTGAAAGAAGAAATTCAGCATTTGAAAGTTTTGACTGGCCAAGCAATGCCGAACGGTAGATCAATCACAAACTTTGCTTCCTTTGGAGGCGGCCAACAATTCTATCCTTCAAACAATCAAGCAGTTCATACTTTGTTAACTGCGCAGCAGTTTCAGCAACTTCAAATACAATCCCAACAGCAACAGCAACAGCATTTTCAGTACCAGCAGCTGCATCAGCTTCAGCAACAGCAGGCTGGAGACATCAGAATGAAACGATCCATATCTCCTCAAAGCTCAAAAGACGCTGCATCGGACACGAAGCCTCCTCCTACCTCATGTTGA 1233 46.96 MDNEKPQCRGGGFLQESTRYSGFSSAESSFNGKSEAASSSMSLPPLAPSGNSDWGQSGRGMSTDSNRFSHDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGGDGPSLSDDTEEDLLSMYLDMDKFNSSPGTSATQVGDSSSSVVEAAATSTDDIAVGLKERPRVRHQHSQSMDGVTNIKPEMLVTGSEEASAADSKKAVSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAMPNGRSITNFASFGGGQQFYPSNNQAVHTLLTAQQFQQLQIQSQQQQQQHFQYQQLHQLQQQQAGDIRMKRSISPQSSKDAASDTKPPPTSC 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11486420 11490505 + CmaCh14G015180.1 Cma14g01518 308501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01518 410 Gene3D - 221 273 - -
Cma14g01518 410 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 404 - -
Cma14g01518 410 MobiDBLite consensus disorder prediction 380 410 - -
Cma14g01518 410 Coils Coil 238 307 - -
Cma14g01518 410 MobiDBLite consensus disorder prediction 70 86 - -
Cma14g01518 410 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 404 - -
Cma14g01518 410 Pfam bZIP transcription factor 222 270 IPR004827 GO:0003700|GO:0006355
Cma14g01518 410 CDD bZIP_plant_RF2 223 272 IPR044759 GO:0003700|GO:0006355
Cma14g01518 410 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 283 IPR004827 GO:0003700|GO:0006355
Cma14g01518 410 MobiDBLite consensus disorder prediction 17 69 - -
Cma14g01518 410 SUPERFAMILY Leucine zipper domain 222 272 IPR046347 GO:0003700|GO:0006355
Cma14g01518 410 MobiDBLite consensus disorder prediction 1 86 - -
Cma14g01518 410 SMART brlzneu 218 282 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01616 Cma-Chr6:10049991 Cma14g01518 Cma-Chr14:11486420 0 dispersed
Cma14g01518 Cma-Chr14:11486420 Cma20g00307 Cma-Chr20:1509757 9.41E-55 dispersed
Cma14g01518 Cma-Chr14:11486420 Cma06g01613 Cma-Chr6:10037514 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36299 PF00170 bZIP_1 1.00E-08 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01518 - - csv:101212010 622.083